Scaffold Ga0212123_10001050

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10001050
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81017
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 62 (76.54%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001399	Metagenome / Metatranscriptome	705	Y
F001867	Metagenome / Metatranscriptome	624	Y
F003278	Metagenome / Metatranscriptome	496	Y
F006802	Metagenome / Metatranscriptome	364	Y
F013683	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100010502	F001867	GGAGG	VTGVSPDQLWFQKYLEFHCDDCGSDTGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLVFMPVKDRLPEAAKKAPTNVPRSDRNVA
Ga0212123_1000105020	F006802	N/A	MPLILCLTVVLSVGIGVLAAYGAVIGILEACGQASQMRPSEARPRLVLVPTQNHASGD
Ga0212123_1000105050	F013683	AGGA	MELKDHDFIRNPVVQNQIFFLESKCAFCSFSMLTRSIEELVELEKLHRNQCGSSNAAA
Ga0212123_1000105055	F003278	N/A	MTYGSVGLVCALPYCEWEQAMLKISLIDNAGRRRLIVEGKLIAPWAAELRSVCEKARADLRGRELIIEMKHIATISQEGENVILELINEGIKFRCDGVFTKHVVKELTRRAGRNVGEVKR
Ga0212123_100010509	F001399	GGAGG	MKLNDSFTAYDIAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGNEPNQQPFLVRKVAQPVAIEGRKKSSA