Scaffold Ga0212123_10000903

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000903
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89333
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (70.21%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F000536	Metagenome / Metatranscriptome	1044	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000781	Metagenome / Metatranscriptome	895	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001959	Metagenome / Metatranscriptome	611	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000090315	F000536	N/A	MVELTPQQMQALERLFEAGFRPIAISPYESALCVRRGECAAVLSPVPNGGLKLLASPSYMVAGNLSVRLKRGPAEVFVWKKTELTATPERLGELESFRRELTEILDLPQTQ
Ga0212123_1000090318	F085961	GGAGG	MNARSSQPPWEFLLSASRNSLQSFELSRLAHAANLRKEISALIDQWMEENAAALLARWLLEQRERSTRAPDLLSAPESGKNGAHAASDNFLADRAASQPVKGGPS
Ga0212123_1000090321	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEELRHRCGQELLRRGMFPPRKYFRNES
Ga0212123_1000090329	F000885	GGA	MATTNTTSTASNAHLEFIGMIVEIAGVASVVAGVVLSLHHWPAAVALLGGGVAYLIGKKLRAS
Ga0212123_1000090337	F000739	GGA	MKRLEIWLRGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGTGATLRIAAAAALINAVIGVAAYLQKSPLPTD
Ga0212123_1000090338	F000696	GAGG	MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDATSPVLLRNAQEAIAYATAALAGWARGSPLAEKWDDAATDAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF
Ga0212123_1000090346	F000781	AGGA	MLTVAQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPSTPAPAPTAVASINVQASNGWFDISVTDPSDARPGLFYFAESDTMPAFSSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSTPITFGSPPTAVTGGGTTGPAPLPSSGSGVLPNGLPRGGNGFGVNPGSRITRQTVL
Ga0212123_1000090347	F000703	AGG	MVGARYTVPLCGCRNTGGDPSMQVREYRESDLAALRAIHAAQGFEYPLPDLSNPLFITKLILSKAPEDNAAVESESPQKKIIGAALLRLTAEAYLLLDPKAGTPLERWQWLLQLHAATERDAWQRGLEDVHAWLPPPIARKFGKRIAQLGWNRDDTWTPYCKRIND
Ga0212123_1000090349	F000624	N/A	MPIHWSTVLAALVPVGVQFVMFLRWLHRRMRNDEITRAFVRDIATNHLPHIYSALRQIAEEKGIVLHEPPLVRFIDLQGNRHRD
Ga0212123_1000090362	F001959	GGAGG	MKNIDSLFAAYMAAWAIFFVFYLTVALRTAAIRRDLDRLKNSVARGK