Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000774 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000774 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	97992
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	55 (56.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

97992

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

55 (56.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000495	Metagenome / Metatranscriptome	1076	Y
F001033	Metagenome / Metatranscriptome	799	Y
F001680	Metagenome / Metatranscriptome	653	Y
F021010	Metagenome / Metatranscriptome	221	Y
F105647	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000077415	F001033	AGGCGG	MKFVSRIKSMAVPHQILGANTNEKRDLLMCGRSLIASLTIAVFVFQMLGVTSVVHAQRPDSTAGTSSAGTRKLVIGPSSTSVALGKASLIVSPLTHRDGNYVGDYQLKVRPYFFKSEKGSLLLAASDDAVRKLQTGTAINFTGQAVTHKDGRTHIVLGTATPSSRDRGSVTFSIATDDARIVFNTSYHFGT
Ga0212123_1000077416	F021010	N/A	MKTIVAFIVGLLIATTAWAQVDPANGIVWLPAHQGTLHGSGYHHARYQMGLRNDGVVVWRWIH
Ga0212123_1000077418	F001680	GGA	MQQEIDCKMQSNSRCILWASTCAIAASVVLLASCSAFQPVIDVVPVGGLQQGVVFYLGDTFRQHQEFTVTAVTVLEERSDGSTRAIWILEGGQERGQRLRYITYGAKYPDLKEGQRPLRLRRGKRYEVFVYTSTGAKPVDVFAFRVDENGNVRQVPWFIF
Ga0212123_1000077419	F105647	GGCGG	MAVGNIESFNFPMRYRLLCLVLLLEMLVVSTPILRATDLRGGVVGLAGPLVGIGVALLEVKPNETLRLVRQTVTAPDGKYHFTNVHPGQYVLRIGRIDYPLEVRDTQMQDVPVIAKPRQ
Ga0212123_1000077456	F000495	N/A	MMRTFLIGTLFGVMVTAAVTCVFAIPANSDYWRMEIYKRGGAAWTVDRTGHVGWKWMAEPIRDTPREKRIITPPSAVKISEQL
Ga0212123_1000077462	F000495	GAG	MIRTFLIGTLFGVMVTAAVTCAFAIPANSDYWRMEIYKRGGAAWTVDRTGHVGWRWMVEPILDTPLQKRVITSPSAVKVKSELL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000774

Overview

Ecosystem & Geography

Associated Families

Sequences