Scaffold Ga0212123_10000711

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000711
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102929
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (78.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F000540	Metagenome / Metatranscriptome	1043	Y
F007596	Metagenome	348	Y
F023940	Metagenome / Metatranscriptome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000071118	F000540	AGG	MVKKKSARVPPKLTEAEQDLLAHIEQGYQLETDSLGGNPVLRRLKDKDDEVIRPLSANRNTIKALEERGLIRSGKGRDLLTIIWHVNKRR
Ga0212123_1000071189	F023940	AGGAG	MKNAHLRFGWLTYVKSTERTTTSIKLRLDRFIGEVLPDPPRQAKAHFLSVIGGDTQISAVSAAISMGDRFMVEGPDVQPIRVCLERNAQCFKGSIQLAGRKKPLRHLIGMSEEFASGNMSAGSGRTLLAGSDKRFV
Ga0212123_1000071192	F007596	GAGG	MSLRIRFRFDGKCSLHPPYDPARDGRPQQSNCEGCESLYVIHLYTKIAKRRAENENGILVRTSSGREEQHAIDEPGKLSNTENK
Ga0212123_1000071193	F000208	GAGG	MRIRVTTRADLYEKRKQEHIERGYRIENERPIPANGFCYFIAMRETPVSDTVGELVAQAINGGRGSLRDW