Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000709 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000709 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	103167
Total Scaffold Genes	97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	72 (74.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

103167

Total Scaffold Genes

97 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

72 (74.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002108	Metagenome / Metatranscriptome	592	Y
F006072	Metagenome / Metatranscriptome	382	Y
F011500	Metagenome / Metatranscriptome	290	Y
F019893	Metagenome / Metatranscriptome	227	Y
F054196	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000070923	F019893	GGAG	MQMKPSAILLLLSSLQVSFFTPSVVAQKGAPVSDSPEITLHSSSNLVLVDVIALNAKSGLPDKTLMRDDFRIFDNGQAVSIKTFDSGAKFTTRPLALWFVVQCNMPGYEAKGSGLFAGQISLLTPPLKHLEKQDTVAVAHWCDDGQSKLDLLPTSDIDEAATTLEQVLVPAPDTKDHDRAGELALQKTLQQIIDATRSLVPEAVPVVIFLYGDYSGMDRSEANHFIDELLETSAVADGLRDRRSPRIWLIGEQGAVANYIAAQTGGQYLRVTPKTYAKGLEEILQQLHCRYELGFKPEALDGKRHRLRVELAAAGKNQHKGVRLRSRAAYVPVAFRYRD
Ga0212123_1000070964	F006072	AGGAGG	VLKTAAVVLAFVSFMLFATASRAQLLPSGNVYVGVAYGDSVDVINRYTFRGWNASLEDFPFSRYTHVGVVLDGSGFYRLGIQQYNVFLGPRLSTNIGKWRPFVQAMGGAQRMTSNGTTHYPVAWDIGGGVDRKFQFLFMKHFAWRLQFDYMHTHLLSATQNDIRGSTGLVWRF
Ga0212123_1000070974	F002108	N/A	MSQTPEPAAIEVSSASAPSETPRPFRVKLRGSVLALIRLPNRRQIRGKLHQLSTTGGLVNVEQPLDEKLQVELIFHLGETTIREKAEMMFPMWATQGWLQPFRFIDLPEERKNILRTNLLAFVQQTQE
Ga0212123_1000070975	F011500	GAG	MEIVTPKTVRRSTRLRVQISLLVTSMDRRHSFSAQCVAVIVSPQGCGIRASQALPIETPVLLSGLPGGGSASGRVANCLPLGKDAKSFLIGVSLYNQGNVWGIADPPEDWNCLPDSGAAPNGAEDKTKKGKNAWPYNRFSGQGEAHPRGK
Ga0212123_1000070981	F054196	AGGAGG	MRAQLPLALFALVFGALEFAGGAQEMIYLGIMNSETYPLIAGVLGVLAGGLLLAAGITLLVSSPLAPVLAQATAWISVPVFTLTGIVTHRAGWSITAVGILFPLLLVFGQRNSKNAATASKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000709

Overview

Ecosystem & Geography

Associated Families

Sequences