NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000690

Scaffold Ga0212123_10000690


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000690 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)105112
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004416Metagenome / Metatranscriptome439Y
F011163Metagenome / Metatranscriptome294Y
F016029Metagenome / Metatranscriptome250Y
F023149Metagenome / Metatranscriptome211Y
F056835Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000069041F056835GAGGMLKSLLLIIIICGVALPAFCEPPAKYEVATILDVKPHQSAGDSSSSEAASYDVAVEVAGTIYLVLYTDTLGTNTVRYAAGRELLVHVGKKTITYNDILGRSQEVPIISQKPDTTVSRSK
Ga0212123_1000069070F011163N/AMEILFVLMLGLLVLGPKRLHTMLGHAARVKAELENATRGLRAQLAAELDAAPGAGTTDCSHVLVGDCDLCSTFKSVPESREPAEDGLMRN
Ga0212123_1000069074F023149GGAGGMKKSYLSAVLTLTCLLGLGISARAQDTEGVRVNVPFEFVAGGATLPAGTYTVGRLSVDAYSGITISSFGHGAFVLPIFVDGTPTGQLKLSFEHVGDKYFLSKADTAGGLYTFALPRAMVAQAQVKDQSAVSSSGTN
Ga0212123_1000069087F004416GGAGGMLVNSTHIIPRSQHEDDSALLRHKMEEMNKNTVRLIAETEKLIQESKRLSERITSFRESH
Ga0212123_1000069090F016029AGGAMKRVLILILAITTLAAARDKKSKAQPGPYTFTSKASAQALKVLIVQANVREGYALDSDNQLQFRFSKPAQMPIVSALFVASSACTGMTTKKAWSYTLAELNGMTKVTVQPVWEYPDDYCKTQTQELIWSQRDEIAAFQAMLDKAR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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