Scaffold Ga0212123_10000647

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000647
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108734
• Total Scaffold Genes: 105
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (81.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F001247	Metagenome / Metatranscriptome	737	Y
F008825	Metagenome / Metatranscriptome	327	Y
F012243	Metagenome / Metatranscriptome	282	Y
F016839	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_100006472	F001247	AGG	LKSKTWNVIANTGKQASLESGLEKKEIQKPPQISSKEFIHWLAAEGRVDDDSLRSLFKQ
Ga0212123_1000064726	F012243	GGAGG	VRAYGTVPYFFSYAAFAVVADTVRFAVHNHPSTYYATYWITEAGYDILGILVMYEVLRTLLGTFTRAWWARLIFPSIVLIGIVMSLARTDAVPTRIVGLPHYIVAGEIAVRFMQVFVFAISVTLVPLLGLRWRQYSFGIATGFGLYATVMLLTTIKFSDFGTTFKLLWGWTSLVAYSVAVLIWIWFFSIPQKVTTSELSAPAPGVLKEYKDALRRMR
Ga0212123_1000064727	F016839	GGAGG	MFSIILTWLIVAWGALSCIYMLRCAWRRFPKRDVDDVIPFLYPVDISLAESLLDPAAEFEFRWKLQPPQFREAQRKRMRLYLELTRRMSHNATVLVAYADAEKNSQDPRRVSLASTLQEKAVEVRLYALLTRFKLRLRLLLRSEILISKPVLPNLRTACDIDGLQTYGALKIAAAAAFVQLPPEELDSLTRNL
Ga0212123_1000064738	F008825	GGAG	MNCVELQDSLAEVEDASTVEQRAHLMDCPACYALVRELDLIIEAAGRLQAADEPSPQVWNSITTALREEGLIRPQRATQPLVSSFSARWGAARWLVPAAAMLLVALGLYVKQQSAPRPIAEQAAVVAPMVKASDLNDDDLMQEVAVNSPAMKGQYEDNLRQVNDSIREAQGFVDESPNDADARRSLMDAYHQKSMLFEMAMDRALP
Ga0212123_100006474	F001083	GAG	VLESLREDLAYARLNNGRRVLDVADLRQYIYEPMGRIRTTSLAIDGLYRNNNGDGQDISKSNGHNGKAHLDKIWHERDTEAGHLRDEL