Scaffold Ga0212123_10000642

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000642
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109222
• Total Scaffold Genes: 109
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (73.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F000359	Metagenome / Metatranscriptome	1236	Y
F000912	Metagenome / Metatranscriptome	839	Y
F002319	Metagenome / Metatranscriptome	571	Y
F004416	Metagenome / Metatranscriptome	439	Y
F004553	Metagenome / Metatranscriptome	433	Y
F023648	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000064229	F000912	GGAGG	MSLDGFVRCTCIRNGKAKPHPFPDRRIVDESAEPSLTGDPSEQDGKAHDQWLGESCEHEGSLLSLFLGNITRVGNLRSFLRTCSALPDRRFPIFLEKALYDGTHTGDWISSKIGEKLLKEVDTVLHSSHILADSEKSSSTI
Ga0212123_100006423	F004416	GGAGG	LLLTSTQVIPRSKGEEEDSALLRGKMEELNKNIVRLISETEKLIQESKQLSERIKSFRRKERTTVGAAA
Ga0212123_1000064237	F000359	GGGGG	MSGQVVLYFEDQADALRFALAAGSVMAGDGSSATDDLLHGTARVSRIRLDAANAGRLKKPTPERAA
Ga0212123_1000064249	F023648	GGA	MLRATLISAFVVAALLSQAQVSSSCNSVSFKVTLHVSEDFEKELGGGLLFRVKSEKQPGWFVDIVPAEATSQDYIYPVNLPLRFNPNQTLGPGYGESVRSSLAYTHEMQFLLYKPDYDRVSSLIGNVLSSYQTSDPDKALSDYASAARKAKKGMLKVAVSSYKTNNATGALARIKLRVQITTPLEFPYAPGLTPMPASCPADIDLSVR
Ga0212123_100006425	F002319	GGAG	MTSEVVNLQVTASIPIDCDFWSEDDGWKGLCKSLSVTAGGGSFEDAKKTMATELQAYIERILREHPKRSANLFVS
Ga0212123_1000064268	F000238	AGG	MSPKPHPPRWSGIPLRVLLVTFLGTLISFSVSLFLGIVGTGAVSVLRGVHANMTIAYRHIALPTAAVAGSIIFVLTLTMEIRHYRQSKTLASIERVS
Ga0212123_1000064280	F004553	AGGAG	LNLRFGKTAAATVMGAALMFFVAAPRVHADDRSKCQHAVEKAEARLNKAIEHNGERSREAEDRRRDLNAERQRCWEEHHQWWNGKEHRWETEQSWDHDHR