NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000580

Scaffold Ga0212123_10000580


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000580 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116206
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (74.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000985Metagenome / Metatranscriptome813Y
F001133Metagenome / Metatranscriptome767Y
F034257Metagenome / Metatranscriptome175Y
F055484Metagenome / Metatranscriptome138Y
F087514Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_1000058037F034257GGAGMNKINRMGFLIMVGMLAISPIFGQTKQVQQQRRPAANAPASDVAPYKAQDGSGASYILDGLPLLLELHHDTEVGTNQPVDVYMFVIEMQIMNSDGNLEPIGLQIHNYYTRWPQDLKTVFNPHNARDCKIWNGLQTRAMRNRNPKIKTWPYVELVTAVDARVLQTNEDGAVWWSDDIECWGSTDRFSPF
Ga0212123_100005804F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKEQIAEAPKPSLTATAPQQPVRIPPVVATAPPAPARVAGWEEAAKRWP
Ga0212123_1000058051F087514GAGGMGVGWQIFWFLFHLAVVYAIVNVCTRLLARWTRDTLLPLLQHPSSSGRFEYLYSHLFVFSLIPGFVAGLVNARFRHKAAQFVWLLPAVILAYKFRMFPSPSVLQGQLSAAFHQYFGGGFTIPDFRNWHEFLSIAGSNSDIARGRAQTNFTAPLYAGIGYSLAAWIGLRTELNRKIAERVTTWEESRFGPHS
Ga0212123_1000058054F055484GAGGMDTNKAAYWIALGVFALGLNSEYQHGRFVALHRVSEHAGSTLCRMATRAEQTLAVARVLTSRERFLVDGLSAATGGAEMAQGQDELLRDQVRDEAELLRDRVLGQADVIRAQAEVQRAEVEQIRLRMRSRFRIARAVDRRVAVVCPKTGVRIAVNAGMRLAEVSPDVEDSF
Ga0212123_1000058068F001133AGGTGGMWIEKLSDGVLEVDTPIGPRYVQPNLMQRAYLIWTFRNFFSLPQQVLRPWERRLIDRLWSENRFVSVSAAGAPDRPVIGKIERRAPALAEVLPIRKPVSGSNPAVAEQSREAASA
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