Scaffold Ga0212123_10000480

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000480
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130771
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018414	Metagenome / Metatranscriptome	235	Y
F031170	Metagenome / Metatranscriptome	183	Y
F041899	Metagenome / Metatranscriptome	159	Y
F044949	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000048024	F044949	AGCAGG	MTNAIGAGVVLEYRFRDSFCFHVRLAELLDREMPSLIERLKIFHGEIVGITEPKFLR
Ga0212123_1000048025	F018414	AGG	MTMRLSEAEMSSIVEAGGGKYVGVLSEIPERMESIILFISPQTRTTLGIPVSRLSVEAVREQLAESDAAFTEAGSK
Ga0212123_1000048069	F031170	AGGAG	MGNIANENEHPDHLQLKRLLEEAKPLMLPMFPDQQKVWVAESPLAQEIKSILAKHPEYYDEVRAAVGEVFPKPKASASASGS
Ga0212123_1000048073	F041899	GGA	MLVAIFILVVSLAALIQFAAFTWRAAFMSVATMELPEDRAKCITLNDFEEASAYEKLCPELGTRGGTKLASVSAYHSFLQFVTSIGDAILPPAAGWAQREMALCTRYATVTLAQRMERNQIVAAELSSF