Scaffold Ga0212123_10000466

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000466
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 133151
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (80.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001247	Metagenome / Metatranscriptome	737	Y
F002358	Metagenome / Metatranscriptome	567	Y
F005728	Metagenome / Metatranscriptome	392	Y
F026629	Metagenome	197	Y
F029199	Metagenome / Metatranscriptome	189	Y
F043510	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000046610	F001247	GAGG	MKTKTWTVITNTGKQADLACGLEKREFRKPAHISPKEFVHWMAPASHINDDSLESIFKR
Ga0212123_100004663	F029199	GGAG	MEVPRSATTKRHSKRTKAVVPVRLWIAGSKDIHLAHTLDVSRQGVRLGGYRGDMKVGDKIEIQYHQNQAQFRIAWITASKGSLERQIGAECLEPGKQVWGAQFPQEADQYEQK
Ga0212123_1000046654	F002358	AGG	MPVFINEAKAVESRVREEAQPPHEQVPALVELLKTRSYAEIRQRMYDREPGSPWWMACRAELDLRNGQQVGEASLAMSRTSEKMRASVQHFEQLTDTLHQATKDIGDLLRGTQEAGRRLEIAVYVAIGVTLVQFFNLIFEVFRKR
Ga0212123_100004666	F005728	GGA	VFGFSDLVSALPEGRQFPQHAWKKVFDAVFLDAAMQISSLLQIEAECHHGAPAKRIGPISDDTLGYLSSSSRSCCSTGCAS
Ga0212123_1000046687	F026629	N/A	MKILFIHPEDDPEKGPWAILAWDHIVDLGLGGVNAYARWSNKFRCPLTTLASLRNGFDDFRQVRHILGLGCGQLIDEHGLDWWEIMSSYLAEEVEALILLQRFARTIDSEDEVYVSRHGLHARLLQCLLATRTKVFPSRRGAKKGGLAHYVRASRRLSAPQIIDVFWDKYDAGYQLRGLLARKRIPSSRPVVLLPTAYVNVSRTSIAYANTFPDENFLLVSTRQSGRMRDLPPNVAGAWLSFYASVRDRSDENADMETRWRSLLKGLEGVAEFDTLRRLGYLHDFPRRFRRGVEVRDAWRNVLDTEPIEGVLCADDSNPYTRIPLLLAKARGLANIACHHGALDGGYVFKRCYGDVIWAKGEMEEDYLVRKCGAPPGKIEIGAPALPAACVRRQSSAQTFRANIFRSNILFISEAFDITGGRAEEFYRDILPPLADLARGTGRRLVVKLHPAESKPERANILGRVLSSEQRSVAHIVNGPLTEDLLASAWFGITILSTVALECAIRGIPCFLCKWLESQLYGYVEQFIRFGVGIGLHDPSEIKKIPQYLEQHAVRAEVLDRCWYPAAPNRLRQLLTSTQKSCNAAAG
Ga0212123_1000046695	F043510	GAGG	MMSESREIRLPADLCAAAEKKFGSTFRTVDDLIIFLLKEVLRRDTIDMDRADQAVVEERLRDLGYI