Scaffold Ga0212123_10000460

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000460
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134444
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (74.40%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000300	Metagenome / Metatranscriptome	1340	Y
F001036	Metagenome / Metatranscriptome	796	Y
F001289	Metagenome / Metatranscriptome	730	Y
F017355	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000046014	F001289	GAGG	MKNPYDVLRMKEQELLRVRKEMDALRVAARLLGADDPGAANGEARPKLQRVVEMP
Ga0212123_1000046046	F001036	GGAGG	MKVPVTLLALVLAGSAFAAMPAGAAQEAAEKKDAPAAKKETQWQGNVIRFDKDQSMLEIHGGPAPSTELRKVAYDSSTHWTKQGKPGQQDEVKEGSFVILLGHVDDSGVLHATRIDLRRP
Ga0212123_1000046047	F017355	AGGAGG	MVRKLFALLFASVLVLGLSTPVFAQEGSKPAEGKDVKQDRVEGTVTRSNKDKSTLVVRNRDTNVEKTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGTFDKDGILHATSISKRLTR
Ga0212123_1000046049	F000300	AGGAG	MVNKLFTLLFASILVFPLSTAVFAQEAPKEAKAAKPARWEGMVTRVSKDQSTLTVRDVGSSHEKTVQYDSSTKWVSQEHGSKKVNDIDSSQVKDGDRVIAEGTWDKDGVLHATLISKRLTRL