Scaffold Ga0212123_10000425

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000425
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141144
• Total Scaffold Genes: 145
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 111 (76.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004531	Metagenome / Metatranscriptome	434	Y
F006318	Metagenome / Metatranscriptome	376	Y
F008299	Metagenome / Metatranscriptome	335	Y
F080428	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000425124	F080428	GGCGG	MTNRLTSLIVVLFSVTACFAQEGLIVQTQGKQKWPAAEAQKIYLSACSVVQQEFGNSRPVAPRVTLVLGASKNEVLFQGQEVRLTKWDPYGFAQGVVWLAFVDLMPSQQRLAIAKRAVDWVDATVDVEHLRK
Ga0212123_1000042559	F004531	AGGAG	MGQEISVSYQAVKSKVYRLIDSLVEDAKSRDDVQESVKRWWKHIHPADRPIARKHLLSVLSKSNATLAAISGGLNELQDFENHASVHTETMPRIHTMPTPNPERMKASV
Ga0212123_1000042581	F006318	GGAGG	MWLEACMWRQPPIWEPQGTKFRPYSVTTLIFFYIGKFFGLLFGRRR
Ga0212123_1000042597	F008299	GGCGG	MADAKLLQFPMRNHELFSLEINQQVLRNSEFNQVLYAAIRALPHVQNSRLRDELKRALCDLLLRQDGAA