Scaffold Ga0212123_10000354

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000354
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 155898
• Total Scaffold Genes: 154
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 112 (72.73%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005482	Metagenome / Metatranscriptome	399	Y
F017357	Metagenome / Metatranscriptome	241	Y
F040221	Metagenome	162	N
F047233	Metagenome	150	Y
F049810	Metagenome	146	Y
F075185	Metagenome / Metatranscriptome	119	N
F091819	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000354102	F047233	GGA	LSAAGLNWLRGAAWTVFALDLVILFQMAYAAATGSAGGPTGQALLRGFTIMLASGLLGVAVVLIVSSWKRNAIGLWIALISAAIPLLWVGAGILGVGD
Ga0212123_10000354146	F091819	AGGA	VRSANNLDPAQLRAVLPVADTDVFKALYYDREQAALRPNLTFIDPNGTIIFETNEVGLKGDPVDPQRKLAVAWGDSVVFGSGRGWACLIDRLAPGWQFLNGGLDGDPYSNILRRAGAFNRRYPVALNLVMLGWHHFVPAQLMTRAATRTRWFAWKHDPPQEIWLPHSGNENLRAELTSFLERTPNTAVLTTPTALNRQIIDRDLSSFLSSGNDETGFRFLGDIPYQIDAQRQGFEHITERNAIAREVCARMRVRLVDVFARFDTENAADFREHFYDVLHFRPRSYPLLTQFIYDQIKDLL
Ga0212123_100003544	F005482	GGAGG	MTTPKLSTEPAKVFEDREQPGQWRVEWFDDDGRTELEIFSGPDARRQALRYAVQRYGHFVEVQFERIG
Ga0212123_1000035446	F040221	GGAGG	MSEPAIGIAGAVLLGLAILALIFGPRRSKGRFVDTGLAVGTGLLGLAIGLVVAEQVHQPSAISAAAAQPGPPPAPAASPGYVESRLSLQFPIDDANPIGSGQTNVADWYAFRNSIAYTPGTEEKTGKSQEEILKLLADVSWSWLIVVAFDQPTHYSRIDVNFTGGELPYYQITRQDPHYAVIHVQGRIPPGQMEIVASE
Ga0212123_1000035447	F049810	GGAG	MDRTKWMRLSVRDLGDVVRWAAAQHAREIGEFRYRVVNGREIVSFRLVPRYAIDIGAREIIVVAYARMIGWRARLRELRRIAGALMRRAQEKAGIIAAAPSPLASLPPHRIAQLRPLAAAGQPRTQPL
Ga0212123_100003548	F017357	AGG	MAVHGLYKATDGSWRQADANKGVPLLYKLKDHERWTLLDRDRAMVVHPNRPAKIVYPDGRVEEIASSPFPSCSRGHGGQ
Ga0212123_1000035484	F075185	N/A	MAIKAVGMWRTAAHLGHQCKSHWGPLAGVLTGLMFVLVQLTTAHVGDSCTRLGQVAEEWRFGLPARQVMCIATTDGDLVYDRFVAPSRQAARQATTLIQ