Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000341 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000341 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	158800
Total Scaffold Genes	153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	121 (79.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

158800

Total Scaffold Genes

153 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

121 (79.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001759	Metagenome / Metatranscriptome	640	Y
F002165	Metagenome / Metatranscriptome	588	Y
F002337	Metagenome / Metatranscriptome	569	Y
F008209	Metagenome / Metatranscriptome	337	Y
F045405	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000341128	F045405	GGAGG	MANTQTDIIARYGNWFKGDDDLFTHCLILRNGECRLLGQGLRAVTLSKFKAPAAKLKKLKAELAAIPPAWPDASYTGYNFITDAESLTASEIAVYGKKAGGGLPGYFVPPVGSEAATLVKAIANID
Ga0212123_1000034152	F002165	GGA	MADESDPRVEEIVARQAEEIERLKDAFGLLGVSACSWCKKFLRRTDPGTLFDAGELVCYGCIHEWWPKRCVQLSTKERENLEGKLVFWLRDYHHAETFKDPAKLPESSLQELHIVANCLECHGTGTSLGQESCRFCEGRGTVWVIVPRKKG
Ga0212123_1000034191	F002337	GGAG	MNLAIILVVGAAVALGVILRLTITRSLQAKGNSAATIRPIDVEAFRNLIDPAEDQYLRRHLPPTQFREVRRARLLAMAAYVQVAAGNAAVLVRVGESVLARGDPRFTEAAGQLVDDALLLRRNTTVALLRIYMALAWPNSPFAAGRVIDRYEQVSSSAMLLGRLQNPATAVRLSSRS
Ga0212123_1000034193	F008209	AGGAG	MKRTLLIIATVLMFLNTIVVPTVAHADGGSGGGNCSGSTGACRP
Ga0212123_1000034194	F001759	AGAAG	MTLKSALQDLRETTLAAVAGLLAKLAYLGSLRRREGGYKHWGLSLIHGEESSDRALKAAHTEVLSRVLRTPISDLREDLQQSSLADQQNAGTYIAGMRQQFKQLLPSPHDAVSERHLNSVLIALSKLEKNRKPATPSVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000341

Overview

Ecosystem & Geography

Associated Families

Sequences