Scaffold Ga0212123_10000330

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000330
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 160494
• Total Scaffold Genes: 146
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (84.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003553	Metagenome / Metatranscriptome	480	Y
F027567	Metagenome / Metatranscriptome	194	Y
F035399	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000330105	F035399	AGGCGG	MRFFWITGFLLLAGCSMFDSKPSGTATLTLNDSYWDQVNVEIVLTRSSDCENRDGYISSRQILMRRNKTEPVDVPSGANVCWRHDRNPNNPVAGAWSGWTKATLFPGQSGESDI
Ga0212123_1000033050	F027567	AGG	VKQFLQRVDRVAGDLNVLLVVVAIGLATLDLTFLVTQKVVDHLPPVTRIAHDAEPPASN
Ga0212123_1000033059	F003553	AGGAGG	MTRAELDAALGRLGLDVSEREREEVVAVLPLLQQMLDRLRPPGGRDVAAEPAHVVKFPEG