Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000306 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000306 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	165291
Total Scaffold Genes	137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	111 (81.02%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

165291

Total Scaffold Genes

137 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

111 (81.02%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000438	Metagenome / Metatranscriptome	1143	Y
F001146	Metagenome / Metatranscriptome	765	Y
F038866	Metagenome / Metatranscriptome	165	Y
F055042	Metagenome / Metatranscriptome	139	Y
F058326	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000306110	F055042	AGGGGG	MKHFSTEEWVDFVNHLVTTGQKEEMQKHLATDCKRCKETVSLWQKVRKTAALEASYQPSTDTVRLAKAAFAVSGLAQTRKESPSLIEVLFDSFLQPAVAGARSVVIGTRQMLYRADPYQIDIQIEPKPGGNRIVITGQLLDLSNPGVIGSDIQVTMSNHRGNSVVVAANQFGEFSGEIENSGDLELSIPGHGEKPIVISLRNALGNLPGGKP
Ga0212123_100003062	F038866	GGGGG	MTWKDELLMLWIFCTVVIAFAARHFFGGAVYMVEQMAAFSIAYVPGLLHLLARHLR
Ga0212123_1000030633	F000438	GAG	MGINMDKFEEFGRRIDEELTRLRRYIDEEVAPETEKRTAQFLREVSEKLTQAASKLESRNSARAERDSQKPPSQS
Ga0212123_1000030677	F058326	AGGA	MNIAVLPVLALLLSPVAVAQTPAAIPPDLKKDIQIDIQSPIKTEGAVPVAAEPHHAHVFQNGFVQVYNVTVPPLDATLLYRDDLPYLYLILGATEIVNAVEGKPPVQMTMEDGATRYSPGGIAQVIRTDAGISFHNITVVLAHPQASPHNLGDKGNDRPLGSCPQSNATPTQNDQIPFEQVLPCFETSELRMDEVKVEGGKDYVQASPETAALLIAMSNADLDVSVGGEHAAFLHAGDVLWLPPGLARKVGDFLGTESQFLLISFKDSGTAPGK
Ga0212123_1000030683	F001146	AGGGGG	MFQQVGMNNRGMMKIKDSNRKWMWWFLGVVLALQLYFVRELLAAFAIFAVGFAAIAFVVMSLYMMQKAWEVGVQRVADSQHPVVDMARRSVNAVEDLARRPLRRPGSAAAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000306

Overview

Ecosystem & Geography

Associated Families

Sequences