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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000253 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 181756 |
| Total Scaffold Genes | 181 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 96 (53.04%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003211 | Metagenome / Metatranscriptome | 500 | Y |
| F012293 | Metagenome / Metatranscriptome | 282 | Y |
| F022560 | Metagenome / Metatranscriptome | 214 | Y |
| F032739 | Metagenome / Metatranscriptome | 179 | Y |
| F052141 | Metagenome / Metatranscriptome | 143 | N |
| F090803 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000253111 | F022560 | N/A | MAFVAIKMGRRQGGPSRTGGMQSAYLNRYVTDEQRSRRPIFIATLRAVAGWLFFCVAHSSRINSDMLVVSASAARTALKNSQLTDGESRAICGTGH |
| Ga0212123_10000253114 | F003211 | N/A | MAIWLIFRVAHSLRINSDMLVVRALKISQMTDGGMPPTYDSMH |
| Ga0212123_10000253169 | F012293 | AGG | MNAKVFLALALSTPLFVSSAEAIMYTVRTDSGPVTYSLYVPPGTPVGGKIKPNPQVGYSAGFRVTASSAEVVAVSWAAGLKEKDKSDNYPNSLITLGGTIPGGFYNAASTTPTSVQRINAPVPYYLVQMRGYIAGSAQTFYAAVLDDGNIVLPVRVSQHAYAPVHHSKQAASGSREKKKRKSASRVPGDRATSRAMGGAELKEGWNGSDPSN |
| Ga0212123_1000025323 | F032739 | N/A | MNAQEAQTLQLHETVVWTPDGTKGEVTVIDGSGVQVRWADDQCGYYQFTDLLSQIERLP |
| Ga0212123_1000025336 | F052141 | GGAG | MTERVEMCRRTVVVDGKVYSVRRQSDSVFLLRLNDLAVRYVVVTADSIDFHGFERFVWPVAAGQISSFEKLDDAAAYYQKLTGSTKD |
| Ga0212123_100002537 | F090803 | AGG | MRVFFTAAVLIGSLGVLTLTSCVEMLALDVRPKSRALLIDSTDVLYVKDLLAQTAKDYGLEPQELVSSDMIASYQGGKKGSFSAGIAFILLWQYANPSHLEVDISGPTPVGATILSKRIFREVKAKLIAHFGSDRVRNLSKTVVNPI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |