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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000222 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 193203 |
| Total Scaffold Genes | 172 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 105 (61.05%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007243 | Metagenome / Metatranscriptome | 355 | Y |
| F027363 | Metagenome / Metatranscriptome | 195 | Y |
| F034727 | Metagenome / Metatranscriptome | 174 | Y |
| F079016 | Metagenome / Metatranscriptome | 116 | Y |
| F087658 | Metagenome / Metatranscriptome | 110 | Y |
| F103623 | Metagenome / Metatranscriptome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000222138 | F034727 | AGG | MTTDEVLDALGRYTRDSKESDRQTATKLGIGHPILADWLSGRTRPQKTTLARLAGFLRRAGYL |
| Ga0212123_10000222140 | F079016 | GAG | MKPGRIETNSCAQELWGELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPNPSFCPVSD |
| Ga0212123_10000222141 | F087658 | GAG | MPPAHYFQITLEPHLKHSGLATGRKIIFLAEVPVKTAREASEAPEDDRMVYETAERLAANLTCMAMTGESAQPGEDEMRISFRSISGMSYDVMQRHPDAEKDGVRIWLIGARPE |
| Ga0212123_10000222142 | F007243 | N/A | VSHGEALIHRGEGLNSLLIMTSIHATILSAEKFRDLYRLIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLWRTD |
| Ga0212123_10000222152 | F103623 | AGG | MSTNESVYPRWEREDRVSRFFIGPSLPIYQIEEIELIGGSMFLASESDKSNLVGQFESERNAKEACKRDFVDKNNDPATEPVGWGLNPRQKSR |
| Ga0212123_1000022245 | F027363 | AGG | MSNTGTIKTLFENWLTDVRRRGAELYAENQADEVLYLSFEGKDQVRYSLRIDFDGQELTVQVNSPDLKSAKGESFLLNEESLRLLARRMCPLPEGQAVISVYLLARLAILCHAYQRLLAEYDREHHIQTTTNTIQEIEAELRQCLTPEEQQRTENPFLRPKGK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |