NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000203

Scaffold Ga0212123_10000203


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000203 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)202690
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)174 (86.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001548Metagenome / Metatranscriptome673Y
F002835Metagenome / Metatranscriptome527Y
F009088Metagenome / Metatranscriptome323Y
F018635Metagenome / Metatranscriptome234Y
F028635Metagenome / Metatranscriptome191Y
F070360Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000203112F009088AGGAMESDYIEELRAELRELLKKQANVLESRSFGTATDTELLEYEIRQEIVHEICAQLAHSTIG
Ga0212123_10000203187F028635N/AMAHAGRILVWWDRDVDQAGRPIRPDVRLAGHEIWKPACQRTQVLLDDQGPAAELMENAVAQVSRYLDRIGAPESSCKHGLLMVAFCRGLRRYAAKLNRLEFVGGSGELSSRTLDEGWVSQINARLELERIARKLRDKNGIVLMLRASGYEWEDVGQILGQSSASIRMSFWREVDRIRGLLTSTTDD
Ga0212123_10000203191F001548GAGMRPVRVILWTAAVAYTGFLLTGQGLRTFNSLSISEALLGALTGFLLAIMFTLRERRRQRPALVEYSIEQIFPNWGISRENRGSHPQPKR
Ga0212123_10000203193F002835GGAGGMTTAFPPCLRRIDWRPLYRAAILETNKMVLPQRVSDAEAAVIARRREIFYADGSPEEKEALEDALYALHAFTTAWQHSEAA
Ga0212123_1000020333F018635GGAGGMLLSSTQLIPRSQHEEESSLLRRKIEEESSLLRRKVEELNRNTVLLIAEAGRLIHGSKQLSDRLKSFEDPSTKRKVPPIIASGNR
Ga0212123_100002038F070360AGGAGGMGGHSSPEITCILCSKPVDLKVDLSADENGKAVHTECYVRRITNPHGSPSAMLAD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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