Scaffold Ga0212123_10000164

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000164
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 227531
• Total Scaffold Genes: 231
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 141 (61.04%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003842	Metagenome / Metatranscriptome	466	Y
F007949	Metagenome / Metatranscriptome	342	Y
F032739	Metagenome / Metatranscriptome	179	Y
F065479	Metagenome / Metatranscriptome	127	Y
F069160	Metagenome / Metatranscriptome	124	N
F094183	Metagenome / Metatranscriptome	106	N
F100524	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000164133	F065479	AGGA	VADQPDQKQPGATLVFQEALMQAIELWDKTPVSILDQQAVQTHALLMAMGKYITYRKEKRELESCPDGSDFIHRLIMDL
Ga0212123_10000164138	F007949	N/A	MQNLQELCTALNGFGLPRAIVDFEHRSFIAWNPKFLEHTGLSEGEIRASNPDDLLIMAESWFPLSGETGSQKIEYIGCTVKRLFGADPAPGFLVRSNHKIGYLMLDVFDSSSAQFEQGRIVGREEERNRINKAFHDEVSSSIIAALFLIETAKIELEEAGLPQAEAVGKASDILSETTEKIADVLKDGGPTTEPSPSTESDAV
Ga0212123_10000164164	F100524	GGA	MHRGLITILCLLAGFSGFAPRTEAAAFRSTEYYCQVTLPDGSYVEPWFAMVPANESGVLTGARRRDFAAYVYVGIVDKKDQPHFVLDDKSIEQLDKSFFGPGLGFLNKTQKINLRGVDGYRLIGRHHFNGRNYAMVVDLYYEHGLVYEVAGLSALYDDALQDSDVLGFMRSFAILPN
Ga0212123_10000164183	F094183	GAG	MNYQELAGKLLHLAERLQKHGTKLEGDLVGKSAVKLATDVDQFDATLDGFLASRKSGELLLETLLRSPAAKKHLSLDLLRKALREACSKRLKAEDLVAAKKEFIETVHELDRAEAASKFLKHAFAEAAYVAPGGKEKGELQQEFFALGRLSEEEYVTTIAKRTFGELRRLAGTNGIRFTDKTTKPHLIKVIRRYSRRLATNLLPAA
Ga0212123_10000164196	F003842	AGAAG	MVSTKESRPIAPETQKWAFSADGKPLNLDEFLESFRKQGIFYEGKEQWLKGVVKVSWENFFLVCTEELDDISQRAAKMLVQYCLEIVEDVAGRIRGPVDPTKIAEAMKREFDEQYDNPIYQFQWAMRHDGIREAVTNAVSNRWGK
Ga0212123_10000164207	F032739	GGA	MNAQEAQTLQLGEIVVWTPDGSKGEVIAVEGSGVKVRWEDDQCGYYRFTDLLSQIERLR
Ga0212123_100001643	F069160	AGG	MRWRARFLRFALASSLLVIGFACQKSAPTDQELTQKLVGTWVTDEAGGNYRFYGENSFHRDGMHSADEILHADGGTTRWSFSGIWDVKNGKLLASGEVYRSDSGSVQTYQVEERIESLTEDELVLVNEKGARLVRHRKRF