Scaffold Ga0212123_10000144

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000144
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240780
• Total Scaffold Genes: 208
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 159 (76.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034259	Metagenome	175	Y
F061103	Metagenome	132	N
F072594	Metagenome / Metatranscriptome	121	Y
F073172	Metagenome / Metatranscriptome	120	N
F095040	Metagenome / Metatranscriptome	105	Y
F098797	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000144146	F061103	N/A	MTRQGSLIYYLTAWICGCFFMSLAIWIRDLWGATATSSRSREAFGVLFFYFYGLVFGALAVLIAAFLLRRIMTRLKCKTPLHWAIAGAVLAPVLVGGLGEWGLRAGGEQRLEPRLLSFLLLGPVMALQAGWWLAIPAGAATGYLLCRVQRAFAPQQSEAPAANS
Ga0212123_10000144152	F098797	GAGG	MDTFAEIHSVDRLTSAGMLFEKESEIHVNHHPPTLDDVQRRARRLHYEHGGVTGGYTLDDWLEAEHEIENTDGSGDENSQLH
Ga0212123_100001442	F034259	N/A	MSKRVDFAKQRRDLGRSLSSAVREITAMVQPVAHQHGINLQVILDGASARKEEEKRLLTERLQESVVPLFIYRDGQPDRIGSCVLVRLDSEFYAFTAAHVIRDNGSAILFAPSEGRGGKLQPLPPCTAHLNSSGSANDLDVGVLALAARRLGAFQRHVFLASAEIDQEDQPDDQDDLRSFYFVLGYSASRTQVKISKAERRIHQQSFRFSTQPVDAAEYLQERMSKSDHILLDFDHNEIQVEGRRASPPKLQGVSGGGIFQISRRAMRGPLVAIATENRRRSRLIIGTRIKHFLAMVRLLRLLQPNR
Ga0212123_10000144202	F095040	AGGAG	MYAYTCCRCTNCAAQIVLEEQGGSDTNLFRRPVRPRAGREACPYCRAVFVPETCYVAESETPLLQQAFAPLVKPEAAS
Ga0212123_1000014447	F072594	GGAGG	VAARVCPDCLQVVPVGKVVAYSNDLVCPDCGKPLEISSPSRYLASFAGLIAAVIVWWAASKHYANDSWALAWVLPIVFSYFALSIVAPIVLALTADLELGTVEAVPIHTETAAHHPSH
Ga0212123_1000014473	F073172	GAGG	MNSMQSSDLTETDIEPSDSAHEAALCENLTKARLQTITGFVKSLTTSTVNLLLAEKPFAREALQELVVKEAALRWIVRVATLSSGDVRARLWADIDEALDDLELIIDLVGRANIEWPVNVALEFSDDLAYIT