NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000129

Scaffold Ga0212123_10000129


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000129 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)251829
Total Scaffold Genes245 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)204 (83.27%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001349Metagenome / Metatranscriptome717Y
F017807Metagenome / Metatranscriptome238Y
F055876Metagenome / Metatranscriptome138Y
F067963Metagenome / Metatranscriptome125Y
F098999Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000129117F017807GGAMPMLIGSTIVVCTLFSMMLGQIAMGMEAAGVLLAAVVLMSVQHE
Ga0212123_10000129159F067963AGGAGGMAPTKQNDRFPPLTNPNPKIADPGKVRLGDTTITGQFPPLRLPDANVADPGNVRLGDTTITGRFPLKK
Ga0212123_1000012919F098999GAGGMRGWWRSAGVACSVGLFILCGPGALSAAPCDQFNPAAPARNAQITLDSGDFVDESRDEMRSFVATGSLGKVDATVVSSTPGNIVRLVSAIPEVSRFSPLYGEQLKGIAITVSLRQGAGSATVVLNLRQVCAEHFRRTILYY
Ga0212123_1000012984F055876GAGGMSGGQIAVLLCAILLLPPGGCFLLMGIGFASDDDRMFRNAAALVLTVAAVILALAGFLFWVAFRRRRSDQGGSPDAPPP
Ga0212123_1000012985F055876GAGVSGGQIAALIFALLLLLPGGCFLVVGIAILTDRQFADMALIALPIAAAILGLSGLLFWLAFRRRPGRDGSPDAPPP
Ga0212123_1000012996F001349GGAGGMSQPRAADDFKTIRSRMEELRRERLPGQSIATSNTNVMGHRGPCACGMSLFPDECDGSCKAL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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