Scaffold Ga0212123_10000099

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000099
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 287881
• Total Scaffold Genes: 267
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 224 (83.90%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001010	Metagenome / Metatranscriptome	807	Y
F001511	Metagenome / Metatranscriptome	680	Y
F001742	Metagenome / Metatranscriptome	643	Y
F002004	Metagenome / Metatranscriptome	605	Y
F002288	Metagenome / Metatranscriptome	574	Y
F002560	Metagenome / Metatranscriptome	548	Y
F006318	Metagenome / Metatranscriptome	376	Y
F010282	Metagenome / Metatranscriptome	306	Y
F011054	Metagenome / Metatranscriptome	296	Y
F034671	Metagenome / Metatranscriptome	174	Y
F064394	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000099152	F011054	GAGG	MHTGSTITDLMATVERAEEKARQIAMEQELHAIFAMQIPMAQGDQVFMGAA
Ga0212123_10000099228	F034671	GGA	MVNNEAVNCERVWHEISNYLEGDGDPTLRAAMDEHFRTCQRCSSVLEGTRNVIRLYGDERMMEAPSGFGRRLERRIAQNVRVTRGRWSVWSTWLVPVAALVLIAGGLRVANSLTAGPELKSEHAQPGQGIPPDMMVVVTSDAKVFHVAGCDFIHNKQTERTLTAKEAIREGYVPCLRCMREYLHTAATGHSTLGAEADAHIDTEEGTAHGGGE
Ga0212123_10000099237	F010282	GGAG	MIMSATTRPLYLKILSCMMVVVFPVALFGADQPGAMLYSHGTALVNGNSIAKSSALFSGDLVQTNSDSVANINATGSSVMVLNESLVQYEGTALRLEHGGVTVSTSRLLTTRAGEVVVTPVSNVWTEFEVRDVDGRVQIAARKGNLTISDATGTTTLAEGQQTTRDDAQSQNNRKRRRDVAPGAATSAAGAVFDSPITIGVAGGIVIGGTIWALAHSDDPLSPAVPK
Ga0212123_10000099266	F001511	AGGAGG	MEFVMFEDVDGMEVFVNPETVIWVREYPNQTTVISCGHEDKFAVRLAPAHAVAALGKSVR
Ga0212123_1000009930	F002004	GGA	MRKIPNSSRLDQHISRALNKIKKPSTAEEITELLNRDLESEDRPFQTKDVAEWLRNAGDTALTLYWSRTRPRR
Ga0212123_1000009931	F001010	AGG	LYNTGDMAARVEMQNTGDPRTRREIAALIEHVLSDRPGEWRVSILGSRANDNWEMKVEGPEGFERSYTLVGSAGEHQPATIGSLVLKLLPARKP
Ga0212123_1000009934	F002288	GGA	MGEADGVTKRRMFRWPKQARELVREYKEQISRSQEHNETGRRILVTKLAAISGNPRDACLRFLCELGVHQKRAYREWMKSEQQRLLDLIVTMPVEEAAKVLGRPAGSVRSMLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRALSTAGTKANIIHPDDFCEFVKEHGRAVVGRRLTYDALWFVQNYVFPPSHADLLSVRGTYKRHDSDVETDLNAESQSAGDSEEGGGQEG
Ga0212123_1000009954	F000208	GAGG	MRIRVTTRADLFEKRKEQHIERGYRIEDERPIPVNGLCSFIAVSEIADSDGVGDLVAQALNGMAK
Ga0212123_1000009955	F002560	AGGAGG	MVEHNPPPSHDSVRPRVIPLPIALYVSGELIFELYDGGQPSRRFSIRWERFVPTKENEPEAESFQTVLHTRQD
Ga0212123_1000009960	F001742	GAGG	MPDTTSGNRGSKKQKIPRIGPEEAARVFAQCEHLLDSATDFIEGQRQVGFAQFLAPLHDQILELALQPDSWGERTRARLISEVFARLRGIPVEKVSVEEIVQISNVVVPCFLLELGRRKHHSDIEFPNDPCEAGARLSLRAGPSGPVHSISVEQLARLVAEAGEDLVGLCYFGDQRSRENIEALLALKGSTTDS
Ga0212123_1000009971	F064394	N/A	MKHQEQIATVARLRSFHSKNGEEPVGVALRRWIEDPITPKTDNGNLRINPILVFLAVMALLAGGTFLFFSLGEL
Ga0212123_1000009976	F006318	GAGG	MWRQPPIWEPQGTKFRPYSITTLIFFYIGRFFGRLLGRHR