Scaffold Ga0212123_10000086

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000086
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 312382
• Total Scaffold Genes: 335
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 271 (80.90%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004622	Metagenome / Metatranscriptome	430	Y
F018572	Metagenome / Metatranscriptome	234	Y
F038779	Metagenome	165	Y
F056486	Metagenome / Metatranscriptome	137	Y
F070339	Metagenome / Metatranscriptome	123	N
F075169	Metagenome / Metatranscriptome	119	Y
F099582	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000086134	F038779	GGAG	VDPGLRRDDAFRRGWTPAVLFAAVLTVVPFGLLAAEAPPCVRGDIVLWGDGKHDDTAALNAWLRGDDLVWAATGEPIGEAIADRDFRLSAAIYVPGGTGRRLQRFRLIWPERGETVTGGSVQSGDDPDQAPVVSGVEIVGGDPGEGVPLETPDIKPADRRDPSRCAVS
Ga0212123_10000086135	F070339	GGAG	MPGLALFRGTMSALATLFGGLGIFFLYYSFMHPELAAYALVFLGSAWAIAWSTSTSK
Ga0212123_10000086140	F075169	AGG	MIEQPVSRVGEYRNQAAKLRQLAYRTFYTESRHKLLMLADSFEKLAERVEARGAAAGQAA
Ga0212123_10000086302	F018572	GGAGG	MPFDGVGLGLDERVGKIDKVIELLATPDRWCKGTLKTHDGRRCIRGAIMAVDGVGTLQPVVLRAINEVTGRHYRRIESFNDHPDTDHSQVAEVLSRARDDLVAGRLAVLRSKPVAAQTGWRARLTGWLEAFRG
Ga0212123_10000086323	F056486	GGAGG	MDQRIDQPIGQRIVQDPTRARQGSKPGIVRYVLVISTLLVVIAFAVAYMTSV
Ga0212123_1000008634	F004622	GGAG	MVWRGSTIDPMADTAASAVLEAFEEARGAGLPSVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0212123_1000008694	F099582	GGCGG	MKRLLVALLFALALVPPAAHADEPIGCALTTAPLMAQPDGSILIGCNGGISDAFGEQLVLVLNQILQNRMDPEAVLAKLGEVASIPDEGIARTVNEVQRHAIIEALSGKDSAQVAIVAHPLVDDAAEFAKGIAAPLTMVGWQIEGNQIRRAAPRTVEAVTGVAIVVRDRDAAPPKAALLKKALGAGSVAAQVVSDPSLPENAAMIWIGRRPVFMKQ