Scaffold Ga0212123_10000076

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000076
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 325918
• Total Scaffold Genes: 279
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 207 (74.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000269	Metagenome / Metatranscriptome	1410	Y
F000323	Metagenome / Metatranscriptome	1300	Y
F001036	Metagenome / Metatranscriptome	796	Y
F003428	Metagenome / Metatranscriptome	487	Y
F009127	Metagenome / Metatranscriptome	322	Y
F017355	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000076156	F000269	GAG	LRVYPFAFAFSFLLTSLLAGASEKAESKPTDLPATVIAHLALPQATGNQMLLQKDNGKEYLYVQQAAKQGFMIVDVSKPERPNLLKRTAESNQATAGNLEMVSPDVAIAEAPEKTPGTLTSNAHPTETVRVLDLSDPRNPKTLETFNKVSSILPDGGHGIIYLTNNEGLWILRYSRRALLEPAKKKVPCDSTSAIAAMPPDCD
Ga0212123_10000076157	F000323	AGGAG	MKLKVMFALLLPGAFLLAQNNGDMSGDRGKDSKGQITVQGCVSRSGGDYVLMKQNPAMTYELHGTHNVKLSHYLGQRVEVTGNESPSLSTSSDAMNKTGSAAATTISVSSIRTIDKVCPV
Ga0212123_10000076195	F003428	AGGA	MLSAIIKLIMAQSDCAAYQKLRDRESRAHTAWTSFLYRNEVKPKLSEKAKRKHQKEEMEAYQQAHKARLAHAKTCPICGEDSA
Ga0212123_10000076204	F009127	GGTGG	MYLLRSGRDQVYSILWALVFGFATLNILSLGARRFEHARAGLNFGEILAIMVVLVSVVLLSWELLYMFHILPIHLAPR
Ga0212123_1000007626	F017355	AGGAGG	MVRKLFTLLFASVLVFGLSAPMFAQEDSKPAEGKAAKQGRVEGMVTRSNKDNSTLTVRNRDTNVEKIVEYDSSTQWTSQEHHSKKVNNIDASQVKDGDRVICLGTWGKGGVLHATSISKRLSK
Ga0212123_1000007627	F001036	GGAGG	MKVPVTLLSLVFAGLVFAAMPAGANQEAAEKKDASAANKETQWQGNVIRFYNDKSMLEIRGGLAPSSDLRKVAYDSSTEWTKQGKPGKQDEIKQGSFVILVGHVDDSGVLHATRIDLRRP