 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000075 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 327317 |
| Total Scaffold Genes | 273 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 220 (80.59%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000065 | Metagenome / Metatranscriptome | 2788 | Y |
| F000882 | Metagenome / Metatranscriptome | 849 | Y |
| F001932 | Metagenome / Metatranscriptome | 615 | Y |
| F005270 | Metagenome / Metatranscriptome | 406 | Y |
| F013706 | Metagenome / Metatranscriptome | 269 | Y |
| F051882 | Metagenome / Metatranscriptome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_1000007514 | F000882 | GGTGG | MPDMEAASLATLRELSSIIASKGYGRDLLYRDRDSHYVLLRHWKSEEARSAAQEDPDMLRCWARLGNEIQIVKVYETLIEVETDKTK |
| Ga0212123_10000075257 | F051882 | AGGAGG | MKNAIFATIAVAVICTAGAVAQDQNQDRHDQQATSHRVRKATVRGYVRKDGDNYVVEDDRDKTRYRVQNTEAIREHEGHHVQVNARLHEDDRSLEVNKVKRLNDDEHRDH |
| Ga0212123_10000075267 | F000065 | GGA | MTHIINKPIPKLGKAPQPPLSRPRATPDSDRAKKPPLAEPSATDQELNPGDRVEGLGNFGKPTGEFGTVEQTNEDDAVVKWDDDGRTRLHQPSLKRV |
| Ga0212123_10000075268 | F001932 | AGAAGG | MRSKLLLWFVLLIAGFLIGFIPQYARLQRLHQELSAATKQLGSCQSSEQLSQLRDTATMMYLEVVQKNYGKAGEHAKEFFDQAQRIGGSTGDPELQPLLRDILASRDQITGDLAKGDAAALSEIEPVLFKLEQTAKR |
| Ga0212123_1000007535 | F013706 | GGAG | MIVSGTHARNPVEGWDISATAKAEPGEKIARARIIVNGFTEYDKTFEPPINGWQQQLLQRGQYPGNNTVEVIATSDKGEDTENEDSWS |
| Ga0212123_1000007550 | F005270 | GGAGG | MDPRFNSASSADISGEDLASVVASLEPDQLISTKQKYHCPRRQLTRKEMILFWALRFYLVFMFGVVIYQVSTAVR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |