Scaffold Ga0212123_10000068

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000068
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 337117
• Total Scaffold Genes: 293
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 218 (74.40%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F000677	Metagenome / Metatranscriptome	940	Y
F000688	Metagenome / Metatranscriptome	937	Y
F001303	Metagenome / Metatranscriptome	727	Y
F003445	Metagenome / Metatranscriptome	486	Y
F007816	Metagenome / Metatranscriptome	344	Y
F030837	Metagenome / Metatranscriptome	184	Y
F069199	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000068131	F000525	N/A	MRLPQKLSTLLSCFVVSCISLFGAGCSPRNFLTRRLAGDLIAAAEAFKAPQLFWLRSGVISNKEFSSPEMMVLKRRGWVVGNEQKKCPIGVDPAPCWDVLLTPLGVDTVRPLISTAVPDAGTIAIQAARREMLGISGISKAGNFADVEFVWHWVSLNQVGAALYDSGVRYRSTVAFRSYDDGWRVVEQGVSPSQPLEDALRNAQPAAP
Ga0212123_10000068136	F069199	N/A	MPENGIKKSLQLRDIAPSDLEEVARFIGRLSGSETPLTVAVERLSWILLENPARTAGDPLGWLLRNSSGELVGCMCCAPQKFCMGQSTFTLLMANSFYVDDRFRGAGTSIFLKYLQMGRRYPLFVSSANPTVAAMWQKLGGYRLGNSDHEALGILRWPPMLAESVYRGTGSGWLARFTSAIASPFFRVRRQLPVGNLEGELLPLKNAEDAADICAQHHSDKITNCREAPFLNWRYFSHTSPQTRLFRFNTGDGEKKQFMIAVRLQNRGYNQQIKALQVLDIWGETDPQTVLAIASCLWREYYDQIDMLVFRCLSLTHQRALQARGFKVRSFPAPIAWCIDKYGLLPSKDWHFVSADGDMF
Ga0212123_10000068225	F000688	AGCAG	MAEGGHRARAKLQSISVTGGLLQLQQQMSAGDFVEIAFHTRSGPIRGMAEMLKPTRTYQSACLQPFRFIALDDDDHRKLRMALDLARDRAFLDPASEQSQSPRGF
Ga0212123_10000068267	F001303	AGG	MDHENRESMEEIRLRISNVTDDLRVIQRELNCAAMQAPTDPELMEALANQPEMESIQVLKSALDQMRHFLWFYIQVVTSDSEMGEKFRQSLRQDASAPAVPDMERQFQNATDAIMLRYLADSKFRKPN
Ga0212123_10000068271	F000677	GGA	MRYLLAIVLLSVAVHAQSFTSNNDPALPDAPSQKPFWTTGNKVNVSILAGLVSADAITTQRGLNQGLREANPLMRPFVTNGAVGEAAGSALGFGAALGAVYLLHQTHHYNVERVAMRLMLAAEGGFVANNIIEIR
Ga0212123_1000006852	F007816	AGGAGG	VKKYPIAVKLFLLLFLPLVIAIVYGVRRSYEARAHLAACYRANVEKRNSLEPSTATINTEVQEIQRDQDAIDQLGGTDDDTVNQRRNRMIDGVKLKLTKVNKDRAEGQRRTEQIQADLSKCLAEVK
Ga0212123_1000006854	F003445	GGAGG	MAFPNDDPTVLHGDRSIQLIDWLVGRLEECLGEVLPLQTDDLLKDYAKDARNSMASAIEQLSLARAKKEQQLGGRTS
Ga0212123_1000006890	F030837	AGGAG	MDDNLVGLVAATLFFGVPLAAMYTYYRVRKLRTEERLAAIAHGANVAMEPDLSEAAQSRRWGILLVAISLGYIAMMALITRANPEAWKGAAVGCVPLAAGIGFLVDFALIRKDLKYAN