NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000067

Scaffold Ga0212123_10000067


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000067 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)339724
Total Scaffold Genes299 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)224 (74.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000508Metagenome / Metatranscriptome1069Y
F001031Metagenome / Metatranscriptome800Y
F006637Metagenome / Metatranscriptome368Y
F023651Metagenome / Metatranscriptome209Y
F076413Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000067102F001031GAGMKPAIDLASGVSHDPYQQTVCCLRCEQKLQRYQLWRSSPVPGNSGHAILSCPRCGHVEFVSDSSPLLQNLELIAVDAGDGD
Ga0212123_10000067157F006637AGGMAICPACMHDVDTPSFLNLSAWRELICSKCKARLEMKPPRSFLLGPLIAPLFVLARRGRLLEIIAFVYMFATILLVLLESLRPKVQLRKKPLPTPEVRLNIDGPSK
Ga0212123_10000067174F076413AGGAGGMRSLKVLGMFMCVLALAAIAVAGPNSMGVRDVNKVTFNAPMRVGAVVLPAGDYVVRHTMEGQDHVMVFQRAHSKDEFKVKCTLVPLPQKADKSQIVYDSNPGSERVLQELEFVGDSAKHV
Ga0212123_1000006742F000508AGGGGGMANLNKVVSSLRSEYSRLEKEMGRVGKALDALGHAGGKTLKRTGRTLSKEARKRIADAQRLRWAKVRKQAAKLAKS
Ga0212123_1000006746F023651AGGGGGMSRKDAVVLAARTLAALLTVWALTDVSYLPERLHSFVYYLSQEAPTSSASGEHFRHYYLIGLGFLIVRIVGYSPMARWLYKSGPEVEELLLPANLPHNDRAADIR
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Institute for Fundamental Biomedical Research
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