Scaffold Ga0212123

Basic Information
Taxon OID	3300022557 Open in IMG/M
Scaffold ID	Ga0212123_10000062 Open in IMG/M
Source Dataset Name	Paint Pots_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022557 Open in IMG/M

Scaffold ID

Ga0212123_10000062 Open in IMG/M

Source Dataset Name

Paint Pots_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	350557
Total Scaffold Genes	272 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	213 (78.31%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

350557

Total Scaffold Genes

272 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

213 (78.31%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: Banff, British Columbia
Coordinates	Lat. (^o)	51.1699	Long. (^o)	-116.1578	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Banff, British Columbia

Coordinates

Lat. (^o)

51.1699

Long. (^o)

-116.1578

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000812	Metagenome / Metatranscriptome	881	Y
F009817	Metagenome / Metatranscriptome	312	Y
F012912	Metagenome / Metatranscriptome	276	Y
F020588	Metagenome / Metatranscriptome	223	Y
F051436	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000062107	F009817	AGG	MPTTWIGAIVKPRAAVLLVFLGLCGSALAQQVSFSLLPPPKSIEPGALVKPVEPVTLPEAPSHRFWDRKNSILFATNAALCTADFVVTRNNLHNGGQELNPFTRVFAGSTTGLALNFAGEAVGVVGVSYLFHKTGHHKLERAVSLLNIGSSAAAVTFDVVQH
Ga0212123_1000006211	F012912	N/A	MELLLNLAWLLLALPAFWLWRGARSVPRGSKFSPVQCVLALGCMLVILFPVVSATDDLRAMRSEMEESSANKRAIRQGSQDKTSIWKCHSQPALAAAATSLIVSDRIWQPLPSLGLFAPPSPAIRHSGRSPPFSLAV
Ga0212123_1000006221	F000812	GAG	LKTHTPPCITGRNSLPDAVSNPSPAPKPRRWSIVAAGLLLLALALVVIYTSRSAFFSPLALVVVAAIGLAALLLQLRLRKDLTTPVRAPMWLNVLGLVFAVTAVFADIIRLTPTLLQIAALGAVVCFGISGTTVLHALHKKKA
Ga0212123_1000006264	F020588	AGAAGG	MTIDERLEALTHNLELLSLETEKHDKQIGQLGTLVTEVAEGTARLLRVVEMHEHRLDSHDDRLDKLE
Ga0212123_1000006282	F051436	GAGG	VFNSLPAPILLDIAILSTAFSWGIGFYIVDRKAHVFSSLAIGCFVCLLGYSVASVGAPPWAVVVAPIPVDILLLWYVLRERRKMLLAYPTIWAVYIVLHVMLSSWLHYDSLIPPWKLHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212123_10000062

Overview

Ecosystem & Geography

Associated Families

Sequences