Scaffold Ga0212123_10000057

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000057
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 354848
• Total Scaffold Genes: 345
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 265 (76.81%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000281	Metagenome / Metatranscriptome	1382	Y
F001289	Metagenome / Metatranscriptome	730	Y
F001412	Metagenome / Metatranscriptome	701	Y
F002860	Metagenome / Metatranscriptome	525	Y
F003315	Metagenome / Metatranscriptome	494	Y
F017275	Metagenome / Metatranscriptome	241	Y
F039020	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000057131	F017275	GAG	VTILAQVAPTFWNTYGAATIAFVGFLIHGLLAFGAAQRVAGQREQQWLSDQDWKKEHTAQANLRDVAIAALQAMGNSNSATVKGIQGQLILIQGELQALRNRAIRGSPESSRK
Ga0212123_10000057139	F039020	GGTGG	MTGISGTAAARAADAMLQTLGGTEVTLLFAAAGLPGDAVSQLGLVDPGVEQVSISPVMVKELTTENSGPRRRIELLAGQAAMAESVSQRNVASADVLFETALGLVYGGEVFHIEGFVVERLGGVSYLYRVAAVS
Ga0212123_10000057167	F000281	N/A	MPQSVKDRVGKLREEIAEISEANRQYLQGGKKMIGASDQERRLQRLQEIMDELKSLTDWKKT
Ga0212123_10000057185	F003315	GAGG	MSLVVKLEDDLGERSEWVMLHGVVPENGHDDFVLLSGIDPFGKTVFNHRQMGAFIKEWERAKDRVRDDTQLEAWNKVKNMAELCRDDRDLYLRFVGN
Ga0212123_10000057190	F001289	GAGG	MKNPYDVLRSKEQELLRLRKEMDALRIAARLLGAEDSRIDKSQDQPKLQLQRLVQMP
Ga0212123_10000057197	F002860	AGGGGG	MPTPEKSKLEQNPNHAAEHVASAHQILKGLQEKLGTHPELGEAITKLEMALSTLAVKTGGLL
Ga0212123_10000057202	F001412	AGGAG	MKLNNVALNALAKTVVLGIAVLLASTAFASNKGTLQVREGVEVNGQQLAPGEYQLRWDGSGSSVEVSFMKGKKEVLKTTARVITLDEASNFDSAVVDRSNGKAVVSEVRFGGKKYALAIGGTEKAEMGAGK