Scaffold Ga0212123_10000045

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000045
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 390148
• Total Scaffold Genes: 335
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 251 (74.93%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000299	Metagenome / Metatranscriptome	1341	Y
F000391	Metagenome / Metatranscriptome	1196	Y
F006516	Metagenome / Metatranscriptome	371	Y
F013210	Metagenome / Metatranscriptome	273	Y
F019726	Metagenome / Metatranscriptome	228	Y
F031621	Metagenome / Metatranscriptome	182	Y
F037320	Metagenome / Metatranscriptome	168	Y
F045272	Metagenome / Metatranscriptome	153	Y
F047207	Metagenome / Metatranscriptome	150	Y
F066949	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000045104	F045272	AGG	MTEKEVVIFTSLKRLGFTTGNQIRLYGEVFELVSEPIVMADNMVLVDATEKKSGKPRRVRIPLPIVNMASRERQAA
Ga0212123_1000004512	F013210	GAGG	MKGLGIESVPEKGRVLNAVALQNAVLCAECDVVSDSPTDTCLVCGSRSLFNIAHMFGGSLPKGRAILTTPEILEMTPRESVLAFPERHRLRSKALG
Ga0212123_1000004514	F066949	N/A	MAVVVEMQNTGDLANRSEIIALIEHALCEERGDWRISIIGSRASDDWEMKVEGPREFERMYTLAGSAGEHQPEAIRSVLLKLLSGRRISNT
Ga0212123_10000045243	F037320	AGGAGG	MLSITLYRSLLRLNPAFHRERFGEEMIAVFAEMQAETVSKGTMARAVFCLREGAGVVAGALQEHWRALGGEDVWLWFPTRRFTMRTEFRFPKATAVLMTIILGGIILAIQKGEAISTSLRGAVSPPIGPIHPVHSVMVGGILLGFVFFYAAGLIGWAILFAMRRSGVHRLSETSTK
Ga0212123_10000045259	F000299	GGGGG	MENGQKTNGSLRPTDRYDVGHVQEVVRQAHGELRQLLQQRAEIMKRIGTVKQTISGLANLFGDGLLSEELMELVDRKSSGRQPGFTKACRMILMEAGRAMNARDICDHFQRKMPAMLARHKDPMASVTTVLNRLVEYGEAQPVVSNGRRAWLWIAEVPTDTPLHGEQRLVS
Ga0212123_10000045304	F031621	AGGAG	MSANSKKSILWTIILVILGMAALYGGAKWLSLLIPAAMLVWFVAKPSLGTGQN
Ga0212123_10000045321	F000391	AGGGGG	MNPEAQQSESPYRVKIETETGQSATVPIAVLTPKQLEVFLQSEFKRLAQEAGVKGARLHVERAIAADYEQVLREVTACLSSAKTRAA
Ga0212123_100000454	F047207	GAG	MALAFASLRMVFCMSGVVQSIRNQPAINPRLLPAIDQLLIAGIKLGPRKKHDAINKILQLVPEWKRGDCWRRIRQLRRTSALATPNAIQDSEQPVNNGSGHRPFSRPWLPEDDDKLLDWAGYEPVTKIAQRLGRSVRAVRFRLGALGMSARVKDGWSQRGLRKLLRVSRARLRHLVASGMLRVRDPRITASSLAVFRERNIQAIDTSAIHMSKHATAEEEAYSWKRAAKLLAITVENIQNLISTGQLKLMDTFVTDRSFEDFCRKRGNEINMTLIDPATKKWLMNEYGVSETADSKILPRAQKHALIIRECRCGRKIAGNVYFRHVRHCRLLQAQSMRAAV
Ga0212123_1000004553	F019726	GGAG	MSSQHSQLSIVPGIGRQEDPDPSYSGYEPTIGLKAVAKILNCSAEQCRRLAEAKKIPVFRIGYRWKSTASAIVRWREEQLALICHSRPSEER
Ga0212123_1000004593	F006516	N/A	LVAVISILMPLVLLVTVVASVGFGVLAAYAAVIGILNTFGRPSQPEPSRPRLVLVPSQNHASGD