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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000041 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 401474 |
| Total Scaffold Genes | 335 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 245 (73.13%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000279 | Metagenome / Metatranscriptome | 1383 | Y |
| F002926 | Metagenome / Metatranscriptome | 520 | Y |
| F004185 | Metagenome / Metatranscriptome | 449 | Y |
| F032374 | Metagenome / Metatranscriptome | 180 | Y |
| F033563 | Metagenome / Metatranscriptome | 177 | Y |
| F063538 | Metagenome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000041108 | F033563 | GGAG | MTSKSKLHGLGIALGAALGAVFGVIAGHMGVWLASGVAIGIVIGATFRHKEAGCPECAQIHRIHELKGPRTTS |
| Ga0212123_10000041202 | F000279 | N/A | MTQNKDNGLTEEVVLPEHLLPLGSVLGEGVSAADLCTVLAKIFRVQYTEVALLRLEGGLLRFIFPEYLRTTGAIPLSSKAVAAHTALSKKAEIFNNFARVKHASIFETIKQGTSSDEPAAPSPIQKLMSVPIINQESAVVGVIQISRKGIDPRSAQDFSREDLHDLELAAGLLATAPALLAN |
| Ga0212123_10000041247 | F002926 | AGG | MAKIKLTSGMWRIDPQKWSRVIDRCGQPVASVEADADSNANASLIAAAPDMFELLQTLEHDASIAEDIREEIQLVLRRARGDFGFAVFSRNVARHLVSRTQDWLKFMEGLWKPDAAE |
| Ga0212123_10000041274 | F063538 | N/A | MNRQFQFRLNGLIITHLKVRPVFTFGATEKWELVACHETLGEFAIDDNDGLADPALTPFILEVRDVSIPPIERRFLLNKGWRRMTTSQCLALLESAGVIDRQ |
| Ga0212123_10000041277 | F004185 | GGAGG | MSLRKTYVRDGQHRIIGSVTTGFTGAFDTIVHDEPGEFLGRTSEHFGTTRDNHGKFVSINTADPGLLIKRK |
| Ga0212123_10000041315 | F032374 | GAG | MGFQEMGTLKCNVCGEAFFIGHNPQSVDMRVAETQANWLEKVLAEEHEREKKHSDRIELP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |