NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000038

Scaffold Ga0212123_10000038


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000038 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)426702
Total Scaffold Genes333 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)254 (76.28%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F000858Metagenome / Metatranscriptome858Y
F001021Metagenome / Metatranscriptome804Y
F001355Metagenome / Metatranscriptome716Y
F037094Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000038126F037094GGAGGMGVWWQLAIGIIVVWLVWRFVGSRFSPREPSESLDDPRVEDPFAGVPSPKRHGPQNRSGAVALAEPDDDEEDESRSFPPRTL
Ga0212123_10000038165F000192AGGAGGMAANQVVLYFDKQEDALLFTLAASSVMSAEGPVRSNQAVLKVAEKICKASRITTDGTLNI
Ga0212123_1000003821F001021GAGGMTKAIAITILSVCLSFVAGIALAEKVRDVHELKAAHHHIEEAMKELNDARAANHYDMAGHGAKAEEHLKAAEHELHEAIESAQQAR
Ga0212123_1000003832F001355GGAMDYATTKRPSCSVCGLNTFRHKGWFLVIENRWFDRLKILSWHASLASQPNMKSICCRQHLKTIIAHWLTQASLRIPPTYNPPIAITSDPTLTDSDLGPDSVGRLVGELAVHRESFSRVWSGSPAALECILDALITIGAENTPQALEFRLFDPPESSHGLSLQ
Ga0212123_1000003865F000858AGGAGMRANPYLFAAYAATWIIHITYLATIARRYSRLAREVRELQK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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