Basic Information | |
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Taxon OID | 3300022557 Open in IMG/M |
Scaffold ID | Ga0212123_10000036 Open in IMG/M |
Source Dataset Name | Paint Pots_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 444263 |
Total Scaffold Genes | 411 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 213 (51.82%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Banff, British Columbia | |||||||
Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001309 | Metagenome / Metatranscriptome | 726 | Y |
F033155 | Metagenome / Metatranscriptome | 178 | N |
F034727 | Metagenome / Metatranscriptome | 174 | Y |
F065968 | Metagenome / Metatranscriptome | 127 | Y |
F097702 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0212123_10000036211 | F033155 | GGTGG | VELEELMFFHPQQGEHESGINASILSYGFPKIIVEGEQLRIGIEGREVQTLYAFMDRGREKDLAGVVVYTRTGQDTLVLLHMAVKPEYSYSVGYRNELVLVRILAQIRSIAKRIKGVKRLSIAYAGQIVPRAEI |
Ga0212123_10000036270 | F065968 | N/A | MAIVFQLDKSGNPTPEITCDGCGDLIKDHQDGVAILDTPGAEPEKILKPIFLCKGCEEKTEQTSGQRRKMPIDQFLLRVAQNVQLLPTDLEAAGRRMMEEAKYW |
Ga0212123_10000036337 | F097702 | N/A | MPRGLFLSVFLMVAMTIPTLSRADEWAPVGRVVNAAYGFRDRFIDVTPIVRRYVLPGAQMDVENRTFGFDPFKGETKRLRLLIETPRGQFYRVYEEGDTIRFWGY |
Ga0212123_10000036376 | F001309 | AGG | MKRIILAVIIFVGTGLLVGAVSFSQEPLHYRLASDPAVHGKGKDGECMDYAVALSSKLAANGIHGRLIFYRWHIRDTDVTGSHVFVVYNLPDNSEWIVDNENDHPREVPTDASAMQLVYLLSSNRSAGVDVELQDGLNHLSFF |
Ga0212123_10000036394 | F034727 | AGAAGG | MTTDEVLDALGRYTKDSKESDRQTATKLGIKRSVLWDWLRGRIQPEKCALARLAGFLKRVGYL |
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