NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000036

Scaffold Ga0212123_10000036


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000036 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)444263
Total Scaffold Genes411 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)213 (51.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001309Metagenome / Metatranscriptome726Y
F033155Metagenome / Metatranscriptome178N
F034727Metagenome / Metatranscriptome174Y
F065968Metagenome / Metatranscriptome127Y
F097702Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000036211F033155GGTGGVELEELMFFHPQQGEHESGINASILSYGFPKIIVEGEQLRIGIEGREVQTLYAFMDRGREKDLAGVVVYTRTGQDTLVLLHMAVKPEYSYSVGYRNELVLVRILAQIRSIAKRIKGVKRLSIAYAGQIVPRAEI
Ga0212123_10000036270F065968N/AMAIVFQLDKSGNPTPEITCDGCGDLIKDHQDGVAILDTPGAEPEKILKPIFLCKGCEEKTEQTSGQRRKMPIDQFLLRVAQNVQLLPTDLEAAGRRMMEEAKYW
Ga0212123_10000036337F097702N/AMPRGLFLSVFLMVAMTIPTLSRADEWAPVGRVVNAAYGFRDRFIDVTPIVRRYVLPGAQMDVENRTFGFDPFKGETKRLRLLIETPRGQFYRVYEEGDTIRFWGY
Ga0212123_10000036376F001309AGGMKRIILAVIIFVGTGLLVGAVSFSQEPLHYRLASDPAVHGKGKDGECMDYAVALSSKLAANGIHGRLIFYRWHIRDTDVTGSHVFVVYNLPDNSEWIVDNENDHPREVPTDASAMQLVYLLSSNRSAGVDVELQDGLNHLSFF
Ga0212123_10000036394F034727AGAAGGMTTDEVLDALGRYTKDSKESDRQTATKLGIKRSVLWDWLRGRIQPEKCALARLAGFLKRVGYL

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