Scaffold Ga0212123_10000029

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000029
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 457791
• Total Scaffold Genes: 390
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 290 (74.36%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001117	Metagenome / Metatranscriptome	773	Y
F003202	Metagenome / Metatranscriptome	501	Y
F009977	Metagenome / Metatranscriptome	310	Y
F010489	Metagenome / Metatranscriptome	303	Y
F035013	Metagenome / Metatranscriptome	173	Y
F072652	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000029124	F003202	GGAGG	MTMRNLAMAFLITSVLGVTVTIRNYETTKNLAMVRQLTNQLQQTKAELAATTVQLSDANNKLEFLEASKARVQVTAYALTDDFGPNPMFSNNAPARSAYAVPQHRLPAGHIINVALSPTAERTLHAKLNDTLVLVSRNRSHKHLARFVDRTKQTEIRPVVDVLFADAHQARLWGRQQFYAVNISRPDSPFAER
Ga0212123_10000029141	F072652	AGGAG	MATAGTRGIGKYVVVYVCLLVAVAAQFLVGFQNTGGLHLVVRILTFGAVETVLVVFFLMNLSLEKRNFLQFFVFFMLFVLAAMNYIWTDSFRLLVFRLTGFGPS
Ga0212123_10000029211	F035013	GAG	MQGRSAAEIRDELNRLLTEEMESLKRQTFGGLTPDEFREQETRLKRIRELSADYLAALKRSEP
Ga0212123_1000002926	F009977	AGGA	MNLFQWLNQHAVSFTLVLAYVPLIATIVTTVVSLVLARATVRYTASSDRSLALAREQFEREWAPELHLKLERMANGEARILATNLAKISVLMQMVQLRRLSMAVPSLRCLLNEPLVGGATWNEELGKRFFACTGEDYNGQVAVSITFYAAGRMYRTDWFRFQVDVHNGKILRIEPVNISARRVRALETHGNGSSRRDLVRDVVDSAENNGDKSAPEVGSRER
Ga0212123_10000029302	F001117	AGGA	MAEKVFVIPTEFLRCAGPNCGVQKGSSDRWWVMWSSLGEHDVPELHLAPWDERLAVREGAIHVCGEGCAQKLQSQFMGNILQNRSRATGA
Ga0212123_10000029384	F010489	N/A	MAWLAALVTLPVRGPVLSAAAASSAGNGQFVNNDGRGPGGRGMKKRLLVLLLLWGGVELSAQTIVQQYIAISQGNNVSDMDLKKPTRKGSVLLAMPAILSPGIKVLSVTDDAPGGGNTYKQIPGAFSSCANKTVDIWYCENCNPGVTELKFHLSDRAKGSINAFFELSNMALSSVVDGNGAHVSDGTATSAGLEAGPSITTTTKDFVIARYFPSVPLPTGVTPAAWTYTTSYVYVQNAPPGTYQPTLTGAGAAGSFCISMAAFRTAPSVALSQPSHN