NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212123_10000028

Scaffold Ga0212123_10000028


Overview

Basic Information
Taxon OID3300022557 Open in IMG/M
Scaffold IDGa0212123_10000028 Open in IMG/M
Source Dataset NamePaint Pots_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)457915
Total Scaffold Genes396 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)326 (82.32%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)20 (100.00%)
Associated Families20

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: Banff, British Columbia
CoordinatesLat. (o)51.1699Long. (o)-116.1578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000749Metagenome / Metatranscriptome908Y
F000900Metagenome / Metatranscriptome845Y
F002358Metagenome / Metatranscriptome567Y
F003673Metagenome / Metatranscriptome474Y
F004246Metagenome / Metatranscriptome447Y
F004485Metagenome / Metatranscriptome436Y
F005890Metagenome / Metatranscriptome387Y
F006203Metagenome / Metatranscriptome379Y
F006902Metagenome / Metatranscriptome362Y
F007325Metagenome / Metatranscriptome353Y
F011023Metagenome / Metatranscriptome296Y
F011101Metagenome / Metatranscriptome295Y
F015646Metagenome / Metatranscriptome253Y
F025531Metagenome / Metatranscriptome201Y
F026942Metagenome / Metatranscriptome196Y
F033181Metagenome178Y
F036390Metagenome / Metatranscriptome170Y
F047229Metagenome / Metatranscriptome150Y
F082130Metagenome / Metatranscriptome113Y
F101759Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0212123_10000028130F004485AGGAGGMRNHELYSMRAANAAQLCRLWSSHVDALERHLSASRWALAALTVLLIAYPVTRILIPAILHRIVPDVVWTVLNLI
Ga0212123_1000002816F047229AGGAGMAYEPSLKVMQALLDPEARNALSLPLAVLITGALSQVETTIELTNRVCDSVFRRSSKTATDSGIGVVKRQTI
Ga0212123_10000028170F007325GAGMVGMRYRFRVWSTLIPLALAAVVMARSNEPTVEELKARVASTSVRDRPHLCVEIAQKQLTEADKLYGASEFEKGQAALTDVVAFSELARDYAIQSHKYQKQTEIATRNMTRKLNDMLHSLGGPDQAPVRDAINRLQRVRDDLLASMFPKGAK
Ga0212123_10000028189F033181AGGAGMSFEAVWGFDPDRVIQAVGLPPSEIETDKFTYSAEEQRAARIPTDLHAQVYELRRMYRLLCRSGALK
Ga0212123_10000028213F000900GAGGLGSEILLILALGLLILGPKRLHTLIGHVARAKAQFEEASRGLKSQLVAELDSTHTERETDTSHELVGDQ
Ga0212123_10000028222F026942GAGMPVDTEGTSRKSPTPTGEVELVKFFAQRRACDDQDHEIACSDARAFVRAVRNALRTVMPLWLALAWWLAR
Ga0212123_10000028230F011101AGGAMKYRAITFASTAFFVTSLALASDTWVLDSSRSNARLFQGSKAISELVNTGVARVTGKVKLDTNDLDASFFELSIYPADEDWGRTLSPGGTLPIGYVPDATDQTLLTFKSTRILRTQNGELEVIGDLTLTRVERPTIATATEDYAGPVYGDPVIRNETRKITFLFPSAGAAHVSGPLTPAMLRKERVLEIVGSARFDRDAFPELLIAIKETNWPAVVQNKDCHMPSTVGEDYSGAPCTGTLVAATRDNNCDVPASAGEDYRGPQCTPATGNQITIVLDLEFLHTVPEPSAGMLLESDETR
Ga0212123_10000028231F006203GGAGGMLESVVALMGGLLLSALMVLIGSCIVGSIVAALLAVSGGS
Ga0212123_10000028232F015646AGGAMKTLYFAAVLSLTCLLGFGGSAYAARNNAHSVDISDAVQIGGTRLKPGNYKVEWQGAGPAVQVSFQQNGKTVVTVPGTLKTNDDQVIQDAIVTEATGAGTSTLKEIDFHHLKEALVFDQNLGSM
Ga0212123_10000028235F004246GAGGMLENWDERDDVVAAGSICPVPDCGALVVSYRPPERTGRDNARSWCEFTCLHCGIDFSVPEDELIFQSVPKEWLLARVQAV
Ga0212123_10000028248F101759GGAMKTMGHRDVKTAMHYQHPELDVVHAALDYGAAGEAAEMRR
Ga0212123_10000028335F003673AGGAGMKKLFALVSLALCLSASSFGADVVGHSTKVAGKDTYKVAKASAKETGKATIAVVKFLF
Ga0212123_10000028361F006902GAGGMWKITTRGFTLEEVLIIAAMNRDTAAKREKRASPK
Ga0212123_10000028373F082130GGAGMSTYERGDYVKVEFPDEATGVGEWMWVRVEVCDDNRKVVIGRLDNEPLNDYDGKVEQGAQLVVSYAKIREHRKPTEFTKH
Ga0212123_10000028389F005890GAGMSFRATNPASFSHLSSCPVESANKSVSTRNYGGELRPSCRGHARSNRAAIVTTFPSRHADDNFALERVCRYVSRLLLGHSFEAFPAPGGTRSSASHLAPLQGLGSSLNKFGNPGKERPSNFFRAPPRKQTFGTWEPGPLAKLCPV
Ga0212123_1000002862F002358AGGMPAIVSDAKVSKNQAGEPDQDSDKVSALVELLRNRSYVEIRQRMYDSAPGSPWWTACRAELDLRNGQQLGEASLAMSRTSDKMRASLQHFEQLADTLQQSTKDVADLLRGTQEAGRRLEIAVYVTIGISLVQFFNLIFEIFRRR
Ga0212123_1000002863F036390GAGGMPPIEILSVEEASESATPTTVPARDRVPARRRFYALSFKDHVRLLLPFLLAGAVGVLARVRYPYWWPANELVYFAADALIVAMILGVAFDLFSAKLLVERVSDGLAQTLVGRGLPIEMQGLVRDVVSTDLVRDHYVKSYAFSTPEDGHVQVDVEVRYEIRNYSEAVRDYAPELTTETFFQPEFRFLEYGIAGRKIYTFSDENLASKVEIEDTLGVTRVPRSALPALSLKPVRAGEKAACQVTWRYGLTVPEQYCDITDLDEATLGATLHVETLPDELEFVSGFDASLHHEAGSQSWYFERAFIGGQHLRAWWFRRRGSARPRPRP
Ga0212123_1000002864F011023AGGAGMVTMRAKSDSQLARVATNLAIGGVGLVIVRLVASVLPMFHDAGWIVKDKLTVQASVIIVVDALLLSVLVRFAIEIRTYLLVRFPPISSFGNMAASLVSLIITGIAYTDFKPVTRAWPDIKPVYLWSFFAVAACLLAGIVVLIFRDRDSIAALILHQPLPARRSSEHTQAESTAAFAGR
Ga0212123_1000002866F025531AGGMNSKDNQDPDRDVRERIVNLMQSIEKGPKKQIPAEELQKLKSAASRLDEMLKAAANADQQALKSAARRLDQLLSDIRAGKDVTSSLARRKNSGT
Ga0212123_1000002875F000749AGGAGMNQGVSPKPAPNVTIRVSGKLFEGHLAYLEQLVHSAGECSLWPLLNLSRLDELDHAALSYLAHGENREFGIVSCPNFIRERMDDEHRRSAA
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