 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022557 Open in IMG/M |
| Scaffold ID | Ga0212123_10000020 Open in IMG/M |
| Source Dataset Name | Paint Pots_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 486718 |
| Total Scaffold Genes | 456 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 359 (78.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff, British Columbia | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F018410 | Metagenome / Metatranscriptome | 235 | Y |
| F047771 | Metagenome / Metatranscriptome | 149 | N |
| F077535 | Metagenome / Metatranscriptome | 117 | Y |
| F081820 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212123_10000020150 | F081820 | GGCGG | MYKRVEMNWACNTRHRFCVALVVSMLFCGLSSSEIPELARLIDDTSNDFTLVVTTKTSASVIVKASSDSCASAVQQNNDALEYQAPSRVSILYAHSPAGYLQLLCVHRT |
| Ga0212123_10000020151 | F077535 | GGA | MSLNELVKKYVAMAGGYGKFMAISSLGLSRSEAERAFDILDEDYHISRFFHFRNDSGEAHEINGFPQTHFSIDSEIQSIL |
| Ga0212123_10000020319 | F047771 | GGAGG | MRACFRSFLIAILAAGLLNLNAYAAPAYAANDRPLGMIIQAEGLAHLGPAKAAIGSTVYPGDSIFTEAGSTMRLRVGSSQVYLLSETGASLSQGKDMVHVVVGHGTVGFSSPANDPIGLDTPLGFVHPVPGHAAFGQVTLTSEIEMIVTAYHGDLIVEENGNVHTILEGKSYRVSKDLEQPALPASSQTGQGSGTTKNAVSTPKGEIVAIVGGVVLVSWLAWSEFCESPSRMHCHY |
| Ga0212123_10000020411 | F018410 | GGAG | MTTLVKTSVFAATLGLACLLPVTAHAQADISPDIYELANTETTVAAQQVQVASNTAKPADFQGRFALPYQVRCKGKNLKSGQYSLSVKSEGTSRVVTIARNGETMNIRAQELTGNPAASHSALLVRKSHEGRMLEAVYIRQLNILLYLNSSAAAQARRMERLPI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |