Scaffold Ga0212123_10000014

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000014
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 557529
• Total Scaffold Genes: 505
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 392 (77.62%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000602	Metagenome / Metatranscriptome	995	Y
F000675	Metagenome / Metatranscriptome	941	Y
F000867	Metagenome / Metatranscriptome	854	Y
F002139	Metagenome / Metatranscriptome	590	Y
F002835	Metagenome / Metatranscriptome	527	Y
F002979	Metagenome / Metatranscriptome	516	Y
F003669	Metagenome / Metatranscriptome	474	Y
F004959	Metagenome / Metatranscriptome	417	Y
F008657	Metagenome / Metatranscriptome	330	Y
F013349	Metagenome / Metatranscriptome	272	Y
F018635	Metagenome / Metatranscriptome	234	Y
F038174	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_1000001415	F002979	N/A	VKPHPKSAKIAKEKAPLRIFLVPCSCSTTFAVAENYDHQGTAWSRYLICPGCGKRHDPKNRLLQMGFHAEGYWKVDEC
Ga0212123_10000014183	F008657	GGA	LTNDDLKASYVVIRHNVRTYESGGVVEVVKGRANAESALKKFESNQSSADRHEGWRYFLEKTNLKAGTDPAEATVLRQAELENRESKATQEEDEGSNNRGGISR
Ga0212123_100000142	F000042	GGAG	MNHIKFVVKVNRGARAAEYVHRVDPSPIHMTTNQKLALVMGKFTAEDAIKSLQNSRCVPELESVRVSA
Ga0212123_10000014212	F018635	GGAG	MLLNSSQGIPRSQYEEESSLLRRQIEEESSLLRRQIEELNKNTVLLIAEAGKLIQGSKQLSDRLKSFQDPKQEAGGGRRAEFSRGGSGH
Ga0212123_10000014217	F004959	N/A	MPKRAKKRQASKMPQETLKGWQQIAAFLGEPPSLVQRWASDGMPVRKQGRYVETTPDELNAWLGKESGKPVHVATENTDLTAELKRGLSFVRHEKPSKPLREAGNPGATTESVRKPGETN
Ga0212123_10000014260	F002835	AGGAG	MNPASPQCLSRADWKTLYRAAILESNKTLLPVRVSAAEEAVIARGREIFFDHGTPEEKEALEDALYALRAYRRAWQHVEAA
Ga0212123_10000014261	F013349	GGA	MRVHRTWLSIVAAIALNLAAQAAPFVVFPKAGHLASQDGRFVVRNTDVEAQPLEFVGAFHSLFLEETATGRTRKLCDYVGVAAVAWTKNNLLIMTEYLSRRTSRALIFAADSSRDTVVIDQPSLANLAPVNLRPQLRENDHVFVEAVQVEEETLTLRVWGYGKHDANGFRWRCEYSLRERSISCKDTPPTLSKTNN
Ga0212123_10000014341	F038174	AGGAG	MISTPGLFLLFLSATTLSVWPQDVPFHPKPGAKVCVATVSNTSARAAMLDRLTERLSKNLRDDKIDAVSMDSSTTMDHKLHPTRENGEEAKGNECDYVLLSQIMDPKKHPFDPQSPQISIGGRVPSIDASDPLGGSSGPVYRDNLQISFALFSVDRIKPVVETVILAQPSGSMSDNLLPAMDRESNRIGHELKKK
Ga0212123_1000001437	F000675	GAGG	MKVSPDSPLSSQYFCRDCGSEIGFRSRRRSLAERLILPLFLLKPVRCGECFRRDYRLIFTQVRDRLPETPKMRPLKAKPASNRNIA
Ga0212123_10000014401	F003669	AGGAGG	MCPFCLATVGLVVAGAVSTGGLAALAVKVSRKKNESEEISPNLNNKEK
Ga0212123_10000014452	F000867	N/A	MRKKSILSVFGIFFLLSCSPRDFLTRRLAADLISATEAFRVPQQFELQTGILSNKEYASPEYLVLQHRGWISASTATCSPGITPPPCWDVLLTPSGVDTIRALIPKDEADKSTLFIPVARRELVGVAGISKQNNLAEVDFTWKWLPLNEVGAALYSGDLHYNSTVGFRDYDDGWRILVASSAHRAGQSLDDALKNAEPVP
Ga0212123_1000001448	F000602	AGG	MTFSTVSLIASFTRTTRAAMAVYPLARAYSAMSLAVAVALLYRGSRQDVYNILWAVVFGFATLNILGLAARRLEPSRRGLSFGELMAVMVVVLSVFLLGWEMLNLFHVFPIKLKH
Ga0212123_10000014495	F002139	AGGA	MTNRVTYAPQDFQKMCKQAERDHESKKLTELMDRVKKQIAKRANPQLQIENSKSVAEPVGAAASRRPSRTVPFER