Scaffold Ga0212123_10000005

Overview

Basic Information

• Taxon OID: 3300022557
• Scaffold ID: Ga0212123_10000005
• Source Dataset Name: Paint Pots_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 940844
• Total Scaffold Genes: 887
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 301 (33.93%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff, British Columbia
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004361	Metagenome / Metatranscriptome	442	Y
F004776	Metagenome	424	Y
F006277	Metagenome	377	Y
F007433	Metagenome	351	Y
F009626	Metagenome / Metatranscriptome	315	Y
F058024	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212123_10000005271	F058024	GGAGG	MKGTKQLLDHAFTLARRARDPVPSELPFGMETAVLAHWRNSCASSKIDIGMLRVFRWAAILACVVAVAGGAWKREDIAQISQRLDPETRIVDSALLAGLDQ
Ga0212123_10000005377	F004361	AGGAGG	MKKCHWTPKLIAFLFAVANLGFATAYAGPGYEYPRGELMGNSGLTIFREADYGNQNGLSIYIDGIPITTLSRGEGYRAILRPGRHLLTVANTPSPYGKTKFTTRAIHLAPGQNYAFTAIWDVETITLEDGGYQYHGFYR
Ga0212123_10000005557	F006277	N/A	MNDTDAGQKSGQIRLLYKIIAYVAAWIIALLLTAPGMWPLAYMFPLGLIAVFDRHLANDGGWGVFIGLYVVYIVHGFFYFRSKTTLRTAILFGVLVVLLMCNVAGCREMIHSH
Ga0212123_10000005618	F004776	N/A	MLTTFSRRVFGALLVATFLPACDIHRPTIREYNTDQAGRVSVSNVSEDQYWKERVDERIAAEIAHEKPEAGYDTWQNYWRWWYSVLRRKKKPAYKSQEFRTSEDMVNYIKEKRRTKGLPTYED
Ga0212123_10000005734	F007433	N/A	MKTIIPLFICVLALAGCAFMKKTSQQPSGQHQVSGKLQKKTETFTGKVVFVDGAYRFAPMNEPKTLLRLTRARRESEFAAEQIDLRKYYEKTLSVVGTRQNDWIWGADVVGQWTPPGGDTGPNMNAPKPTRP
Ga0212123_1000000589	F009626	N/A	VAARARTSLNNGIGRFCPVVFLTVIVLLCSCDSNFFGRESKEIAGGYHLKRADNPNQFVLTIPNESGGLIIDEIGWRKPLIIARASGSQYWDVIDTTRTQHIRVSDSQLKSDPIYQSIQIKPSEIAWKDLNRRKRLW