Scaffold Ga0212121_10001121

Overview

Basic Information

• Taxon OID: 3300022556
• Scaffold ID: Ga0212121_10001121
• Source Dataset Name: Kivu_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29566
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (84.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Rwanda: Lake Kivu
• Coordinates
  • Lat. (^o): -2.0288
  • Long. (^o): 29.1756
  • Depth (m): 325

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080804	Metagenome	114	Y
F096491	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212121_1000112110	F080804	GGA	LNSKPATDAKELALIEKSIIKTMRKFRESPRSFWSTDDIRCHLKVQLLKGRLFKKGSLGNVFLSFPTKNRYEQREDGSLTPSLTGRNDHFALAGWAASIPTTWNNVTQRLSFAVEIEYIPVVPENWAVRIRNDLLKLSDEKNEVPAKGRFLLLLTTQPTSLFRGQLNNLLEEFPSVRCYQQIAQ
Ga0212121_1000112125	F096491	GGAGG	MNAKSMVVVATLLAMVILAYNASAYAWNSSPQITNSLDGSGNTVLTIQFDFSQMSDPPTASHHPTDFQVRTSTDGSSWTEQAVVHITSIPATTVFTVTYSLGKVTGDLQAQARLNCNVHGWSNWGPDPAVPVPEFPFGMVTVTSLLLLVGSLLLVRRERPAYSS