Scaffold Ga0212088_10071263

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10071263
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3448
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F017785	Metagenome	238	Y
F086266	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_100712632	F086266	GGA	MIRFANKFDFPVMYDLLEHFCKLHRFEILKDEAKWSRDHVFKQLSMILAGAGFILIAEDGSGFLVAMKAPCFFIEDAYSLHEIIWHSKNDKTSLKLFKRFIEIGNQMKESGEIKEAHFSCFTDSDFSRYGATKLQNTWKI
Ga0212088_100712633	F017785	GGA	MTTAITPIQNTNNIRYADFIRIVTPSATYRFSTAPVKITVSAVDSQPFDALGALVGVGKIQRDIKSTANQTSVTLIGIDTALLGAVLNADVKGSQITMWKGFFDTSNQLITTGGSGGLYQYFYGFISSFSIGEQWMEEARMYVGTITVSASNIQMILQNRIAGRFTNDPSWQYFTPGDTSMNRVATIATLTYPFGKQ
Ga0212088_100712634	F000934	AGTAG	MPNLTTILSISESVMINDQRFVGQIISRNKRISTSEVMTVVPFQFTFKPMNYLLYSKNRDLLANLRYYDRSLTQYLNFGSTGWVNYISYQGDMTPSQIPSCQWQTSSTGTNLVLGNLPSISSTTYIVKAGDFCQMDSYCYIATQNVLRGSGSTVTIPVHRTILTALVSPQNAVIGQYGTTIAMGGNTYTGCTFPVILQAYPTYTLIPMTNDSFISWSNGFQALEAVT