Scaffold Ga0212088_10038212

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10038212
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5526
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015302	Metagenome	255	Y
F030333	Metagenome	185	Y
F034448	Metagenome	174	Y
F040990	Metagenome	160	Y
F100256	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_100382122	F030333	N/A	MIDRNPILTIPVKTYTHYTECEPWCLANIGEWNIAWWKDFPDIAMSVVVEGPHEDCYWFANERDALMFRLRFV
Ga0212088_100382123	F034448	N/A	MHVNNYTLPRPPEQALNQCHAVYINDPAFRMWAMKKYCRENNLSLIWSELVDTSDVSAFFDEACAFYFIDPADATLFTLKFK
Ga0212088_100382124	F015302	GGTGG	MSRDEYYENTAARLDTIIGGDTQHFLRLQRVKNEYDDLARDVPIGQGFLTFYDYVKEYYGVKLQFDGDNVSLAYEVIDEKKYIMFVLKFNR
Ga0212088_100382125	F040990	N/A	MNYYYEIDPGYDGTIFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSSKVWLENANGVYMIKPTWDARRHRVDRHEFTMVKLRAKTIKWWHDEPG
Ga0212088_100382128	F100256	GAG	MIRVSTADPTFNRAYNNAHCALPVERLEMPRQYGQRWREAYRCRSDGLDEFPHRYYTFDRDEDYTWFMLRWG