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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022555 Open in IMG/M |
| Scaffold ID | Ga0212088_10027047 Open in IMG/M |
| Source Dataset Name | Alinen_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7201 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Lake Alinen Mustajarvi | |||||||
| Coordinates | Lat. (o) | 61.5637 | Long. (o) | 22.044 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040984 | Metagenome | 160 | N |
| F046150 | Metagenome | 151 | N |
| F053027 | Metagenome | 141 | N |
| F059592 | Metagenome | 133 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212088_100270474 | F040984 | AGGAG | MSTRNYKVEFDPTFFGGTYTGHGNHALIPEQLVEEVGMSAAFLKTTGHNPANIVHFAEDLRFDSKGLLCTDEPAIDTSTDSTVELAAEGTVQIPADEPIQFPEPTVIEIGDQPVQIETESQDVPRLSRRKQAA |
| Ga0212088_100270476 | F053027 | AGGA | MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVTTLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDSIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPSAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTGHPVPGSHCEDCATKPCRSLAHA |
| Ga0212088_100270478 | F046150 | GAGG | MNRPTQPQSSRLRVQAATSAVNAPIECPSCGSIFFIEAQAGMYTTSGAGYRNVNQAPQKVYLCPCGEIMIPSNYSSGVPAGSERDLFVQSLKLAIARRNSTTLDQIAQGTVSLAEHNRLKAQFEELATRFNTWAAGGEVPEPVELATNGDEETPEEEQSPEPAARITMRELGAAPLIATGTRGRSAAAAVQSTGDHKEITSTPATIYTGGARERMKRQGVQ |
| Ga0212088_100270479 | F059592 | AGG | VPKRQLASRSVNVEFLTGLELVSTKIFPLPGGVGRRQNPTAYDPRLTHLSGLTPVGDEVVYYEHIATVRHKATNKFFVAFKETMDAFLARSTDLQKYPEWLMKQPNKQAEREIHIYLVTRTPQSVSIMRSHEDWLAHIADVGTFDTLAYFLAQNNVIDEKAL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |