Scaffold Ga0212088

Basic Information
Taxon OID	3300022555 Open in IMG/M
Scaffold ID	Ga0212088_10009521 Open in IMG/M
Source Dataset Name	Alinen_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022555 Open in IMG/M

Scaffold ID

Ga0212088_10009521 Open in IMG/M

Source Dataset Name

Alinen_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15852
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (6.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

15852

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (6.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F040985	Metagenome	160	Y
F041560	Metagenome	159	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000952112	F040985	N/A	MIDITQTPDLISFAGNPVLFEACSDNYMVSLGDRAYFELVVSSIDTTTGHSFHLQFAGKTLIFQSAGFTGFDGLLFEIAYLGQTFNDFAANIYQCFQENYDIQKYFNVTLDPPGASQRKIKLAAKQSGADGTVVLSNNGVTGVTQAVNTAGTDDQYRDYFGIICLIRDTLGNPIGEDIKPADFVGSARFDISDYIRAKFAGWEMQRFEFPEMTGNAKAHGWDYLLKYRVSFAEIIAGNVKGLQSTGWNYAIAGGLNHELITSLNEKYLEYFSIPANKLGFLSWLPLTKYSRSGVMEKLFFLFQDNPSAVHYRLVVIINFTDGTHKLVNATEQVTFTAFSVMEFKVGYDHLDLVNAEYGKTVQSWEVFLMDSNDDFLSERRIFINDERFFENEKVFFYRNSFSAYDTFRFTGKSDINLEYERSIGSTVREEKDTFFNAPSKQFSAKETENCKANSGWISLSEKNCLRELLLSTEAYEQIGKELFQIILKSTKVTPFLKGGEYLYNLEIEYERSYQNAFFSVHIPESSANTILLPEPLTWDNMEVSFDDMEITFDQIEF
Ga0212088_1000952113	F041560	N/A	MLSILIADQSLDLSDDFSVSLNLKSPIFNDIGDYSFPFKVPSTPRNMSILGWKNRLASKRSIYETYEGSIRWNGMVLYTGQIKIKTANDKSFEGTLYINKGNFNYEIKDLLLNRVDLGMKSFPSDQDAVNYFNWSLTHFYPEVDFSVPEIGNLDFFDPQATNPELMAYNHIFPDGWLHKTTSDGQSRTILIPFLYLKYVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQLFYCRLVPSVKISEFISGLEKWFNCSFHVDSRQRVVRIVSNKEVLLRSEVVEFSKNILSITQEIPEQVTGFRFLLGPEGGDKVYQEQLDSEKGITEMIKGAVGSFAEIPPYPFTWLGDIYYIVDTNTWWQLGVNGISFLIEWQQLPNGPSLTDKFFYKWGDDKNKYETIFSSLSDKYIVVNCGNLGADNQKITPRLFWVGMAGGWGTPVRLRGFANNSNFSLRYTGGNGLFNLYWKDWVNWIMDDRKSVKIEKQMDFIELKSIDFTKRYRINGINYLISEITVTLNKSSIKSAQLKCFSAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212088_10009521

Overview

Ecosystem & Geography

Associated Families

Sequences