Scaffold Ga0212088

Basic Information
Taxon OID	3300022555 Open in IMG/M
Scaffold ID	Ga0212088_10007917 Open in IMG/M
Source Dataset Name	Alinen_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022555 Open in IMG/M

Scaffold ID

Ga0212088_10007917 Open in IMG/M

Source Dataset Name

Alinen_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18030
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (75.61%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

18030

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (75.61%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011059	Metagenome	295	Y
F041563	Metagenome	159	Y
F054521	Metagenome	139	Y
F061482	Metagenome	131	Y
F078138	Metagenome	116	N
F091218	Metagenome	107	Y
F096673	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000791711	F078138	GGAG	MIPAMRNAQATHVDFGFLRGIIRDNPNFMPSNIDMVLERKSSFLFGEWKREDEEMKQGQKMLLKELAWVHKVIIITGYVDTQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAEHND
Ga0212088_1000791715	F096673	N/A	MSFTIMRHDGMKVTQWFRTIDELIASMLANPKDSYWRNK
Ga0212088_1000791724	F061482	GGAG	MANYDNWLMSGAYDREDEEIYIESRVPELMHTKDYDPSDVSHMAEAISEASAIDQETIRDFIERKEWDKLGAKLFYMTYEYMEKFAESEAQREVSNGL
Ga0212088_1000791729	F091218	N/A	MPETAKVVDHFRTVFPKIKVLYAEEGQYRIGKKPDPSKYVVPCFSEPVKPKKGKKK
Ga0212088_1000791730	F054521	AGG	MSEAIKDFPMEGAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPKEADEPKIVVQ
Ga0212088_1000791736	F011059	N/A	MDRKREKMGKMTYDQWEARYMNEEGSNYDRDFRFKFISDYLLNPNLAAICRTHNVPYDTALSWKKKNWWYDMAEDLLQNHKDDLLAKQRQILEKTYSELGDRLQNGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITQEATVIDVTPQPLPDTTKG
Ga0212088_100079174	F041563	GAGG	MKIDVKIIKENEDGSANAQVDFDKEGLETLVQWGLVGILTKAIDEYKVRPAEAETAIEPTFPIKKGKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212088_10007917

Overview

Ecosystem & Geography

Associated Families

Sequences