NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212088_10007917

Scaffold Ga0212088_10007917


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10007917 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18030
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (75.61%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011059Metagenome295Y
F041563Metagenome159Y
F054521Metagenome139Y
F061482Metagenome131Y
F078138Metagenome116N
F091218Metagenome107Y
F096673Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0212088_1000791711F078138GGAGMIPAMRNAQATHVDFGFLRGIIRDNPNFMPSNIDMVLERKSSFLFGEWKREDEEMKQGQKMLLKELAWVHKVIIITGYVDTQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAEHND
Ga0212088_1000791715F096673N/AMSFTIMRHDGMKVTQWFRTIDELIASMLANPKDSYWRNK
Ga0212088_1000791724F061482GGAGMANYDNWLMSGAYDREDEEIYIESRVPELMHTKDYDPSDVSHMAEAISEASAIDQETIRDFIERKEWDKLGAKLFYMTYEYMEKFAESEAQREVSNGL
Ga0212088_1000791729F091218N/AMPETAKVVDHFRTVFPKIKVLYAEEGQYRIGKKPDPSKYVVPCFSEPVKPKKGKKK
Ga0212088_1000791730F054521AGGMSEAIKDFPMEGAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPKEADEPKIVVQ
Ga0212088_1000791736F011059N/AMDRKREKMGKMTYDQWEARYMNEEGSNYDRDFRFKFISDYLLNPNLAAICRTHNVPYDTALSWKKKNWWYDMAEDLLQNHKDDLLAKQRQILEKTYSELGDRLQNGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITQEATVIDVTPQPLPDTTKG
Ga0212088_100079174F041563GAGGMKIDVKIIKENEDGSANAQVDFDKEGLETLVQWGLVGILTKAIDEYKVRPAEAETAIEPTFPIKKGKKK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.