Basic Information | |
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Taxon OID | 3300022555 Open in IMG/M |
Scaffold ID | Ga0212088_10007917 Open in IMG/M |
Source Dataset Name | Alinen_combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18030 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (75.61%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Lake Alinen Mustajarvi | |||||||
Coordinates | Lat. (o) | 61.5637 | Long. (o) | 22.044 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011059 | Metagenome | 295 | Y |
F041563 | Metagenome | 159 | Y |
F054521 | Metagenome | 139 | Y |
F061482 | Metagenome | 131 | Y |
F078138 | Metagenome | 116 | N |
F091218 | Metagenome | 107 | Y |
F096673 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0212088_1000791711 | F078138 | GGAG | MIPAMRNAQATHVDFGFLRGIIRDNPNFMPSNIDMVLERKSSFLFGEWKREDEEMKQGQKMLLKELAWVHKVIIITGYVDTQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAEHND |
Ga0212088_1000791715 | F096673 | N/A | MSFTIMRHDGMKVTQWFRTIDELIASMLANPKDSYWRNK |
Ga0212088_1000791724 | F061482 | GGAG | MANYDNWLMSGAYDREDEEIYIESRVPELMHTKDYDPSDVSHMAEAISEASAIDQETIRDFIERKEWDKLGAKLFYMTYEYMEKFAESEAQREVSNGL |
Ga0212088_1000791729 | F091218 | N/A | MPETAKVVDHFRTVFPKIKVLYAEEGQYRIGKKPDPSKYVVPCFSEPVKPKKGKKK |
Ga0212088_1000791730 | F054521 | AGG | MSEAIKDFPMEGAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLRQREEWLKPKEADEPKIVVQ |
Ga0212088_1000791736 | F011059 | N/A | MDRKREKMGKMTYDQWEARYMNEEGSNYDRDFRFKFISDYLLNPNLAAICRTHNVPYDTALSWKKKNWWYDMAEDLLQNHKDDLLAKQRQILEKTYSELGDRLQNGDEQYIPNEGHVRVKVRANHLATIADTTLKANQLLQGKATQISHVTIESLADKLRTITQEATVIDVTPQPLPDTTKG |
Ga0212088_100079174 | F041563 | GAGG | MKIDVKIIKENEDGSANAQVDFDKEGLETLVQWGLVGILTKAIDEYKVRPAEAETAIEPTFPIKKGKKK |
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