Scaffold Ga0212088

Basic Information
Taxon OID	3300022555 Open in IMG/M
Scaffold ID	Ga0212088_10002850 Open in IMG/M
Source Dataset Name	Alinen_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022555 Open in IMG/M

Scaffold ID

Ga0212088_10002850 Open in IMG/M

Source Dataset Name

Alinen_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35352
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	54 (85.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

35352

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

54 (85.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Finland: Lake Alinen Mustajarvi
Coordinates	Lat. (^o)	61.5637	Long. (^o)	22.044	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

Finland: Lake Alinen Mustajarvi

Coordinates

Lat. (^o)

61.5637

Long. (^o)

22.044

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013058	Metagenome / Metatranscriptome	274	Y
F015557	Metagenome / Metatranscriptome	253	Y
F037037	Metagenome	168	N
F040440	Metagenome	161	N
F048059	Metagenome	148	N
F062382	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000285019	F015557	N/A	MENVFVTNRSNTELTIGYDGVVYEFKRNESVQIPLAGAVQLFGYGLEDREHILVRHGWIKTHAELEESLKKLDQFEITTEKPVKNSSLPSAVGVVPLRIEKSVGGKSSERRVA
Ga0212088_1000285023	F013058	AGG	MNQLITTLKSKQVQWALVVAILSVLQGFVMELSLTPVHQMIVGLIISVVIVLLKFIEGI
Ga0212088_100028503	F037037	AGGTGG	MEILEIEKGSVLPNPRVVYAYPYESMEVGDSFTVPVTARAKVLNANYRASKRLGFKFSSKAEGDVLRVWRVS
Ga0212088_1000285048	F040440	AGGAG	MASNPNYPDKPGYGTLFYVAPENKKHPQGPDFTGHLVLDMDYKAGERINFGLWQKETKQGTTMFSVREDNWLKKKKLEEQQPREVTPGYAKNKVKYSDDDNSIPF
Ga0212088_100028505	F062382	GGA	MVELLWMNEDELREHCHLLVEALLVSEIHRVELINNMGKALAYGYNRGYADASVQLKTETQKGNAESLILH
Ga0212088_100028509	F048059	GGGGG	MQPLDKRTLKKELKLFLADKDRGISIKNFCEIAGISERLFVYIIKEDKLPMTESTQRGLNRAYLHWKEGKIRVMKKHTNETYPDYRKEPAPPVIPMNKLVFTNGGFKVQSKPLNRHDYSNFDNILLKT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212088_10002850

Overview

Ecosystem & Geography

Associated Families

Sequences