Scaffold Ga0212088_10002392

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10002392
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39453
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (75.41%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F013732	Metagenome / Metatranscriptome	268	Y
F024467	Metagenome	205	Y
F027395	Metagenome	194	N
F040987	Metagenome	160	N
F042707	Metagenome	157	N
F067353	Metagenome	125	N
F091222	Metagenome	107	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000239210	F013732	AGG	MPAINLPNNQSAILYSRDEISERTTRSISRAYMKAAGSAAKLTNLGFDETKPESWTIFAEISDEDRDNLDGYQAALIVGLVKSWSLGDLPTLDSALDLPKPVFESLAEACSNEFNNSTDFSPDIDPKAPTAD
Ga0212088_1000239225	F042707	GGA	MTQKGILDEIEIIEDLVDQMNAAGEQSAICEATYKALYAQTRLTIRALSKTKLTVDEVEADATVQCEEAHLAYLIAQNRLITTREALRAAQSRLDAWRSLSAGFRSAGG
Ga0212088_1000239229	F040987	GGAG	MQSTTLQRGAEERKVILYKNGESFLITVEVLQSLFHEVGHTETLYTPKSEAQAEFLYGSAVRFLQGFQYIVTDGVLS
Ga0212088_1000239231	F067353	AGG	MSKNAERMIRDKNQALITLNALNETLINDLVRRASIRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKKVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSRIKELVVVYCEACQREVAGTVSDRIRSGYCQACYQAWRREGMPSRYQFELQRREELAKTLEN
Ga0212088_1000239237	F096503	AGGAGG	MFKLNYRTGRKLVWGTAAIVFLYVDVTATGGIFFWATVYGLGTAVVVATLLALISK
Ga0212088_1000239243	F091222	AGGAGG	VKLIDTLTELDFVRESEGDFSNTYRATGFDLRSNVFVNESLNESQVQVCLMPYDPDDEPLWVTFSKYCSAVDNLLKLWTGKDD
Ga0212088_1000239245	F008860	AGG	MSAFVKSDTRTPVPGDIVFAHSNGIMGRAIRFGEFLRWRKGSHWNHACVISRVTQDGTAYVIQADLHGVNEARLDSVGEYVIIEPPARVNRNKILAFTKAQLGSKYGILSILSIVTDIITPNWFPAMRRKNSWICSAVTGEALRYGGWLHNFPDIYTVTPAQLFDALATTP
Ga0212088_1000239248	F027395	N/A	MSYNIIENTTIQFYTSQPFTSIAGTVVNPDKVRFSYSVQGQNEVSYTWTNPTGDPTNTIKQGDSGTGYFYANISTVGQPGTWSWSWYGYPSSGADTTATQVAAQGTVIVSASDL
Ga0212088_100023927	F024467	N/A	MQSVPSFENQEIDIRIDVTLLAKALANDPAFIAAITKAVRDQMTKDVRWMGNLFAKWASTQPPAKPTRNRAQ