Scaffold Ga0212088_10001848

Overview

Basic Information

• Taxon OID: 3300022555
• Scaffold ID: Ga0212088_10001848
• Source Dataset Name: Alinen_combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45791
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (58.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034231	Metagenome / Metatranscriptome	175	Y
F053934	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212088_1000184826	F034231	GGA	MPLIKLNRINKGGEILINSEHILLVEVESRTTTVHLIDRSLFSVEESPALIGDKIEAAHTARIANAIQQSGLTGKPS
Ga0212088_100018487	F053934	GGA	MNTELEAYFAAARTASSSPPKDSEARIQERADFPIRFLETADSLLKSVLDSTAETLQTHGHGASVELVRDQSGSDPNSYPYITLHFSPERCPSSDLSYIYTLAGASISFICRRNDLSIEVVIAHPAGRGVERRVNFATFTLANLNPQRVARIVTDAVKQIIRL