NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212093_1001702

Scaffold Ga0212093_1001702


Overview

Basic Information
Taxon OID3300022554 Open in IMG/M
Scaffold IDGa0212093_1001702 Open in IMG/M
Source Dataset NameDewar_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57787
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.9543Long. (o)-116.5155Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038570Metagenome / Metatranscriptome165N
F040491Metagenome / Metatranscriptome161N
F042758Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0212093_100170250F042758GGAGGMKPTDFINLAARLPAQAITSATNTPSVDLQLLRGVAAICVVGAASTPPSFTIQSSPDNSTFTNITGKAIASIAANSEGVINVRDEELPDGHRWIRAVVNGTCTVAVAFIGTVARSDPPAPLASTTVVD
Ga0212093_100170253F038570GGAGGMPATHMRRVQLGQQSAFTTPVTATSLLRGVTDGSVQIQHSDSVVQELGRNVSTLPVISQRYGEGEIELATTYEDILYALFGLFGPVAPSGNPPARVFNGPVSSFAAPQIYTVEYGTSGAEYRMVGAIIRDWTLRYEANANVTETWGLIGRNVQANGMASPTLRTVHPVLSRHATFYVDALGTPHGTTAIAGTAISFEMTIETNRHLKMFEDSNPLGWGEGRWNATMTIVAEFNAIAKAWVDALINSNVARNIRAEFIETANTREIQIDFVGMLTNAVELFSDRDGNMTVELEFSAIVGAPLSNWFSARVVNGVATLP
Ga0212093_100170282F040491GGAGGMSHLDLIRSFIAWMASLPEVQIIAASILLNTALAVAASIRNDEFKLPELASFLYKHLLPYVVIYAAARIAGDELGLGAIAPAVWLIIEASLVGRIIASLRELGVPIPDELARRVAKRQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.